# HG changeset patch
# User jpetteng
# Date 1515183466 18000
# Node ID a202cc394af83759aab8fff9028502038ecce859
# Parent  e07f3859a2428f989f51f19876a77e2caea384d9
Hopefully fixed issue with finding ectyper.py

diff -r e07f3859a242 -r a202cc394af8 ecoli_serotyping/ectyper.xml
--- a/ecoli_serotyping/ectyper.xml	Fri Jan 05 10:59:51 2018 -0500
+++ b/ecoli_serotyping/ectyper.xml	Fri Jan 05 15:17:46 2018 -0500
@@ -1,7 +1,6 @@
 <tool id="ectyper" name="ectyper" version="2.0">
     <requirements>
       <requirement type="package" version="3.6.3">python</requirement>
-      <requirement type="package">ectyper</requirement>
       <requirement type="package">biopython</requirement>
       <requirement type="package">blast</requirement>
       <requirement type="package">samtools</requirement>
@@ -21,7 +20,7 @@
         ln -s $jobtype.fastq2 sample_2.fastq;  
       #end if
 
-      $__tool_directory__/ectyper.py
+      $__tool_directory__/ectyper/ectyper.py
       #if $jobtype.select == "asm"
         -m 4
         -i sample.fasta