Mercurial > repos > jpetteng > ectyper1_0

comparison ectyper.xml @ 3:4df890ffed44 draft default tip

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Added samtools requirement
author jpetteng
date Thu, 11 Jan 2018 11:37:40 -0500
parents 338b07ddaa10
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2:338b07ddaa10 3:4df890ffed44
1 <tool id="ectyper" name="ectyper" version="0.1"> 1 <tool id="ectyper" name="ectyper" version="0.1">
2 <requirements> 2 <requirements>
3 <requirement type="package" version="0.1">ectyper</requirement> 3 <requirement type="package" version="0.1">ectyper</requirement>
4 <requirement type="package" version="0.1.16">samtools</requirement>
4 </requirements> 5 </requirements>
5 <command detect_errors="exit_code"><![CDATA[ 6 <command detect_errors="exit_code"><![CDATA[
6 #if $jobtype.select == "asm" 7 #if $jobtype.select == "asm"
7 ln -s $jobtype.draft sample.fasta; 8 ln -s $jobtype.draft sample.fasta;
8 #else if $jobtype.select == "se" 9 #else if $jobtype.select == "se"