Mercurial > repos > jpetteng > ectyper1_0

diff ectyper.xml @ 2:338b07ddaa10 draft

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Changed to only use one fastq when paired is selected - otherwise need to make workflow to handle concatenation
author jpetteng
date Wed, 10 Jan 2018 16:12:13 -0500
parents 4724d20b14de
children 4df890ffed44
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--- a/ectyper.xml	Wed Jan 10 14:22:47 2018 -0500
+++ b/ectyper.xml	Wed Jan 10 16:12:13 2018 -0500
@@ -18,7 +18,7 @@
       #else if $jobtype.select == "se"
         -i sample_1.fastq
       #else if $jobtype.select == "pe"
-        -i sample_1.fastq sample_2.fastq
+        -i sample_1.fastq
       #end if
       -d $percent_identity
 	  -l $percent_length
@@ -30,7 +30,7 @@
         <param name="select" type="select" label="Assembly or FASTQ Reads?">
           <option value="asm">Genome Assembly</option>
           <option value="se">Single-End Reads</option>
-          <option value="pe">Paired-End Reads</option>
+          <option value="pe">Paired-End Reads (only first fastq will be used)</option>
         </param>
         <when value="asm">
           <param name="draft" type="data" format="fasta" label="FASTA" />