Mercurial > repos > jpruab > jpr_picard
diff test-data/picard_MD_output3.txt @ 4:f4d018471628 draft default tip
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author | jpruab |
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date | Tue, 13 Aug 2013 12:09:14 -0400 |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/picard_MD_output3.txt Tue Aug 13 12:09:14 2013 -0400 @@ -0,0 +1,112 @@ +## net.sf.picard.metrics.StringHeader +# net.sf.picard.sam.MarkDuplicates INPUT=picard_input_tiny_coord.sam OUTPUT=picard_MD_output4_.sam METRICS_FILE=picard_MD_output3_.txt REMOVE_DUPLICATES=true ASSUME_SORTED=false READ_NAME_REGEX=[a-zA-Z0-9]+:[0-9]:([0-9]+):([0-9]+):([0-9]+).* OPTICAL_DUPLICATE_PIXEL_DISTANCE=100 VALIDATION_STRINGENCY=LENIENT MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 TMP_DIR=/tmp/kpvincent VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 CREATE_INDEX=false CREATE_MD5_FILE=false +## net.sf.picard.metrics.StringHeader +# Started on: Tue Apr 19 15:32:38 EDT 2011 + +## METRICS CLASS net.sf.picard.sam.DuplicationMetrics +LIBRARY UNPAIRED_READS_EXAMINED READ_PAIRS_EXAMINED UNMAPPED_READS UNPAIRED_READ_DUPLICATES READ_PAIR_DUPLICATES READ_PAIR_OPTICAL_DUPLICATES PERCENT_DUPLICATION ESTIMATED_LIBRARY_SIZE + 1 3 1 1 1 0 0.428571 3 + +## HISTOGRAM java.lang.Double +BIN VALUE +1.0 0.948181 +2.0 1.296997 +3.0 1.425319 +4.0 1.472527 +5.0 1.489893 +6.0 1.496282 +7.0 1.498632 +8.0 1.499497 +9.0 1.499815 +10.0 1.499932 +11.0 1.499975 +12.0 1.499991 +13.0 1.499997 +14.0 1.499999 +15.0 1.5 +16.0 1.5 +17.0 1.5 +18.0 1.5 +19.0 1.5 +20.0 1.5 +21.0 1.5 +22.0 1.5 +23.0 1.5 +24.0 1.5 +25.0 1.5 +26.0 1.5 +27.0 1.5 +28.0 1.5 +29.0 1.5 +30.0 1.5 +31.0 1.5 +32.0 1.5 +33.0 1.5 +34.0 1.5 +35.0 1.5 +36.0 1.5 +37.0 1.5 +38.0 1.5 +39.0 1.5 +40.0 1.5 +41.0 1.5 +42.0 1.5 +43.0 1.5 +44.0 1.5 +45.0 1.5 +46.0 1.5 +47.0 1.5 +48.0 1.5 +49.0 1.5 +50.0 1.5 +51.0 1.5 +52.0 1.5 +53.0 1.5 +54.0 1.5 +55.0 1.5 +56.0 1.5 +57.0 1.5 +58.0 1.5 +59.0 1.5 +60.0 1.5 +61.0 1.5 +62.0 1.5 +63.0 1.5 +64.0 1.5 +65.0 1.5 +66.0 1.5 +67.0 1.5 +68.0 1.5 +69.0 1.5 +70.0 1.5 +71.0 1.5 +72.0 1.5 +73.0 1.5 +74.0 1.5 +75.0 1.5 +76.0 1.5 +77.0 1.5 +78.0 1.5 +79.0 1.5 +80.0 1.5 +81.0 1.5 +82.0 1.5 +83.0 1.5 +84.0 1.5 +85.0 1.5 +86.0 1.5 +87.0 1.5 +88.0 1.5 +89.0 1.5 +90.0 1.5 +91.0 1.5 +92.0 1.5 +93.0 1.5 +94.0 1.5 +95.0 1.5 +96.0 1.5 +97.0 1.5 +98.0 1.5 +99.0 1.5 +100.0 1.5 +