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annotate countandcluster/test-data/geneout.tsv @ 1:1a2a9b1cfd93 draft default tip

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author jshay
date Tue, 20 Aug 2019 11:23:10 -0400
parents c516cb51d12c
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jshay
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1 Gene Hits Gene Fraction
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2 1066|unknown_id|unknown_name|MLS|23S_rRNA_methyltransferases|ERMB 5 0.45121951219512196
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3 1479|HF953351.1|HF953351|Aminoglycosides|Aminoglycoside_O-phosphotransferases|APH6 1 0.05854241338112306
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jshay
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4 554|FN806789.1|FN806789|MLS|23S_rRNA_methyltransferases|ERMB 5 0.4024390243902439
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jshay
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5 605|V01547.1|V01547|Aminoglycosides|Aminoglycoside_O-phosphotransferases|APH3-PRIME 3 0.21635220125786164
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6 AGly|strA_4_NC_003384|Aminoglycosides|Aminoglycoside_O-phosphotransferases|APH3-DPRIME 1 0.03980099502487562
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jshay
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7 Bla|cfxA6|GQ342996|798-1793|966|betalactams|Class_A_betalactamases|CFX 1 0.07429718875502007
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8 CARD|phgb|AM180355|2319373-2320111|ARO:3000375|ErmB|MLS|23S_rRNA_methyltransferases|ERM 7 0.45331529093369416
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jshay
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9 MLS|ermB_11_M19270|MLS|23S_rRNA_methyltransferases|ERMB 4 0.31978319783197834
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jshay
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10 MLS|ermB_12_U18931|MLS|23S_rRNA_methyltransferases|ERMB 7 0.5460704607046071
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11 MLS|ermB_15U48430|MLS|23S_rRNA_methyltransferases|ERMB 1 0.12749003984063745
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12 MLS|ermB_16_X82819|MLS|23S_rRNA_methyltransferases|ERMB 1 0.13685636856368563
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jshay
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13 MLS|ermB_17_X64695|MLS|23S_rRNA_methyltransferases|ERMB 4 0.4268292682926829
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14 MLS|ermB_18_X66468|MLS|23S_rRNA_methyltransferases|ERMB 6 0.24146981627296588
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15 MLS|ermB_1_JN899585|MLS|23S_rRNA_methyltransferases|ERMB 3 0.34146341463414637
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16 MLS|ermB_20_AF109075|MLS|23S_rRNA_methyltransferases|ERMB 2 0.27371273712737126
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jshay
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17 MLS|ermB_2_K00551|MLS|23S_rRNA_methyltransferases|ERMB 1 0.13685636856368563
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jshay
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18 MLS|ermB_6_AF242872|MLS|23S_rRNA_methyltransferases|ERMB 5 0.42704149933065594
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jshay
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19 MLS|ermB_7_AF368302|MLS|23S_rRNA_methyltransferases|ERMB 4 0.28270042194092826
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jshay
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20 MLS|ermB_9_AF299292|MLS|23S_rRNA_methyltransferases|ERMB 3 0.2926829268292683
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21 Tet|EU434751.1|gene2|Tetracyclines|Tetracycline_resistance_ribosomal_protection_proteins|TETW 1 0.03252452245740836
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22 Tet|JQ740052.1|gene2|Tetracyclines|Tetracycline_resistance_ribosomal_protection_proteins|TET40 1 0.0475020475020475
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23 Tet|tetW_5_AJ427421|Tetracyclines|Tetracycline_resistance_ribosomal_protection_proteins|TETW 1 0.030208333333333334