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comparison flexbar.xml @ 23:0ef7736004bb draft

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Use of galaxy variable to control number of threads.
author jtilman
date Tue, 28 Jan 2014 08:43:41 -0500
parents 12e4b3bb38c6
children 2720f5e37286
comparison
equal deleted inserted replaced
22:12e4b3bb38c6 23:0ef7736004bb
15 15
16 <command interpreter="perl"> 16 <command interpreter="perl">
17 17
18 flexbar.pl flexbar 18 flexbar.pl flexbar
19 19
20 --threads $threads 20 --threads \${GALAXY_SLOTS:-1}
21 21
22 --reads $reads 22 --reads $reads
23 23
24 #if $cReads2.select == "on": 24 #if $cReads2.select == "on":
25 #if $cReads2.reads2.ext == $reads.ext: 25 #if $cReads2.reads2.ext == $reads.ext:
410 <option value="" selected="true">Off</option> 410 <option value="" selected="true">Off</option>
411 <option value="--random-tags">On</option> 411 <option value="--random-tags">On</option>
412 </param> 412 </param>
413 </when> 413 </when>
414 </conditional> 414 </conditional>
415
416 <param name="threads" type="select" label="Threads" help="check availability of cores">
417 <option value="1" selected="true">1</option>
418 <option value="2">2</option>
419 <option value="4">4</option>
420 </param>
421 415
422 </inputs> 416 </inputs>
423 417
424 <stdio> 418 <stdio>
425 <exit_code range="1:" level="fatal" description="Error!" /> 419 <exit_code range="1:" level="fatal" description="Error!" />
426 </stdio> 420 </stdio>
427 421
428 <outputs> 422 <outputs>