Mercurial > repos > jtilman > flexbar
diff flexbar.pl @ 22:12e4b3bb38c6
Adjusted tool definition to Flexbar release 2.4
author | jtilman |
---|---|
date | Tue, 06 Aug 2013 16:49:33 +0200 |
parents | d62311a7bac6 |
children | 2c6ab15e5964 |
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--- a/flexbar.pl Thu May 23 20:51:05 2013 +0200 +++ b/flexbar.pl Tue Aug 06 16:49:33 2013 +0200 @@ -1,6 +1,6 @@ #!/usr/bin/env perl -# Flexbar wrapper for Galaxy tool definition, version 2.34 +# Flexbar wrapper for Galaxy tool definition, version 2.4 # Author: Johannes Roehr use warnings; @@ -20,11 +20,12 @@ $fileType = $1 if /\.(\w+)$/; $fileType = $format if /\.\w*fast\w$/; $fileType = 'fasta' if /\.fasta$/; - $fileType = 'tabular' if $fileType eq 'lengthdist'; + $fileType = 'csfasta' if /\.csfasta$/; + $fileType = 'tabular' if /\.lengthdist$/; my $file = $_; - s/_//g; + s/_/-/g; my $name = "primary_". $id ."_". $_ ."_visible_". $fileType;