Mercurial > repos > jtilman > flexbar
diff flexbar.xml @ 12:4cbf6c6d2f2b
Fixed issue where adapter removal can not be performed and further minor issues.
| author | jtilman |
|---|---|
| date | Thu, 17 Jan 2013 18:09:44 +0100 |
| parents | 589b4866f537 |
| children | 346a2b0979ea |
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--- a/flexbar.xml Wed Jan 02 12:54:28 2013 +0100 +++ b/flexbar.xml Thu Jan 17 18:09:44 2013 +0100 @@ -94,11 +94,10 @@ --barcode-mismatch $bMismatch --barcode-gap $bGap #end if - #end if - #if $cAdapters.select == "yes": + #if $cAdapters.select == "on": #if $cAdapters.ccAdapters.select == "data": --adapters $cAdapters.ccAdapters.adaptersData @@ -117,22 +116,21 @@ --adapter-min-overlap $cAdapters.aMinOverlap --adapter-threshold $cAdapters.aThresh - #if $cAdapters.caAlignScores.select == "on": + #if $cAdapters.caAlignScores.select == "yes": --adapter-match $aMatch --adapter-mismatch $aMismatch --adapter-gap $aGap #end if - #end if - #if $cLogging.select == "show" + #if $cLogging.select == "show": $cLogging.logLevel $cLogging.noLenDist $cLogging.remTag #end if - #if $cLogging.select == "off" + #if $cLogging.select == "off": --no-length-dist #end if