Mercurial > repos > jvolkening > krakentools

diff test-data/krona.k2.int.tsv @ 0:d491c23394f9 draft default tip

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
"planemo upload for repository https://github.com/jvolkening/galaxy-tools/tree/master/tools/krakentools"
author jvolkening
date Thu, 30 Sep 2021 17:54:31 +0000
parents
children
line wrap: on
line diff
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/krona.k2.int.tsv	Thu Sep 30 17:54:31 2021 +0000
@@ -0,0 +1,73 @@
+24	Unclassified
+0	x__root
+0	x__root	k__Viruses
+0	x__root	k__Viruses	x__Duplodnaviria
+0	x__root	k__Viruses	x__Duplodnaviria	x__Heunggongvirae
+0	x__root	k__Viruses	x__Duplodnaviria	x__Heunggongvirae	p__Peploviricota
+0	x__root	k__Viruses	x__Duplodnaviria	x__Heunggongvirae	p__Peploviricota	c__Herviviricetes
+0	x__root	k__Viruses	x__Duplodnaviria	x__Heunggongvirae	p__Peploviricota	c__Herviviricetes	o__Herpesvirales
+0	x__root	k__Viruses	x__Duplodnaviria	x__Heunggongvirae	p__Peploviricota	c__Herviviricetes	o__Herpesvirales	f__Herpesviridae
+0	x__root	k__Viruses	x__Duplodnaviria	x__Heunggongvirae	p__Peploviricota	c__Herviviricetes	o__Herpesvirales	f__Herpesviridae	x__Alphaherpesvirinae
+0	x__root	k__Viruses	x__Duplodnaviria	x__Heunggongvirae	p__Peploviricota	c__Herviviricetes	o__Herpesvirales	f__Herpesviridae	x__Alphaherpesvirinae	g__Iltovirus
+497	x__root	k__Viruses	x__Duplodnaviria	x__Heunggongvirae	p__Peploviricota	c__Herviviricetes	o__Herpesvirales	f__Herpesviridae	x__Alphaherpesvirinae	g__Iltovirus	s__Gallid_alphaherpesvirus_1
+0	x__root	k__Viruses	x__Riboviria
+0	x__root	k__Viruses	x__Riboviria	x__Orthornavirae
+0	x__root	k__Viruses	x__Riboviria	x__Orthornavirae	p__Negarnaviricota
+0	x__root	k__Viruses	x__Riboviria	x__Orthornavirae	p__Negarnaviricota	x__Haploviricotina
+0	x__root	k__Viruses	x__Riboviria	x__Orthornavirae	p__Negarnaviricota	x__Haploviricotina	c__Monjiviricetes
+0	x__root	k__Viruses	x__Riboviria	x__Orthornavirae	p__Negarnaviricota	x__Haploviricotina	c__Monjiviricetes	o__Mononegavirales
+0	x__root	k__Viruses	x__Riboviria	x__Orthornavirae	p__Negarnaviricota	x__Haploviricotina	c__Monjiviricetes	o__Mononegavirales	f__Paramyxoviridae
+12	x__root	k__Viruses	x__Riboviria	x__Orthornavirae	p__Negarnaviricota	x__Haploviricotina	c__Monjiviricetes	o__Mononegavirales	f__Paramyxoviridae	g__Avulavirus
+0	x__root	k__Viruses	x__Riboviria	x__Orthornavirae	p__Negarnaviricota	x__Haploviricotina	c__Monjiviricetes	o__Mononegavirales	f__Paramyxoviridae	g__Avulavirus	x__unclassified_Avulavirus
+15	x__root	k__Viruses	x__Riboviria	x__Orthornavirae	p__Negarnaviricota	x__Haploviricotina	c__Monjiviricetes	o__Mononegavirales	f__Paramyxoviridae	g__Avulavirus	x__unclassified_Avulavirus	s__Goose_paramyxovirus_SF02
+7	x__root	k__Viruses	x__Riboviria	x__Orthornavirae	p__Negarnaviricota	x__Haploviricotina	c__Monjiviricetes	o__Mononegavirales	f__Paramyxoviridae	g__Avulavirus	s__Avian_avulavirus_1
+1	x__root	k__Viruses	x__Riboviria	x__Orthornavirae	p__Negarnaviricota	x__Haploviricotina	c__Monjiviricetes	o__Mononegavirales	f__Paramyxoviridae	g__Avulavirus	s__Avian_avulavirus_12
+0	x__root	x__cellular_organisms
+0	x__root	x__cellular_organisms	k__Bacteria
+0	x__root	x__cellular_organisms	k__Bacteria	p__Proteobacteria
+0	x__root	x__cellular_organisms	k__Bacteria	p__Proteobacteria	c__Gammaproteobacteria
+0	x__root	x__cellular_organisms	k__Bacteria	p__Proteobacteria	c__Gammaproteobacteria	o__Pseudomonadales
+0	x__root	x__cellular_organisms	k__Bacteria	p__Proteobacteria	c__Gammaproteobacteria	o__Pseudomonadales	f__Moraxellaceae
+0	x__root	x__cellular_organisms	k__Bacteria	p__Proteobacteria	c__Gammaproteobacteria	o__Pseudomonadales	f__Moraxellaceae	g__Acinetobacter
+0	x__root	x__cellular_organisms	k__Bacteria	p__Proteobacteria	c__Gammaproteobacteria	o__Pseudomonadales	f__Moraxellaceae	g__Acinetobacter	x__Acinetobacter_calcoaceticus/baumannii_complex
+2	x__root	x__cellular_organisms	k__Bacteria	p__Proteobacteria	c__Gammaproteobacteria	o__Pseudomonadales	f__Moraxellaceae	g__Acinetobacter	x__Acinetobacter_calcoaceticus/baumannii_complex	s__Acinetobacter_baumannii
+0	x__root	x__cellular_organisms	k__Eukaryota
+0	x__root	x__cellular_organisms	k__Eukaryota	x__Opisthokonta
+0	x__root	x__cellular_organisms	k__Eukaryota	x__Opisthokonta	x__Metazoa
+0	x__root	x__cellular_organisms	k__Eukaryota	x__Opisthokonta	x__Metazoa	x__Eumetazoa
+0	x__root	x__cellular_organisms	k__Eukaryota	x__Opisthokonta	x__Metazoa	x__Eumetazoa	x__Bilateria
+0	x__root	x__cellular_organisms	k__Eukaryota	x__Opisthokonta	x__Metazoa	x__Eumetazoa	x__Bilateria	x__Deuterostomia
+0	x__root	x__cellular_organisms	k__Eukaryota	x__Opisthokonta	x__Metazoa	x__Eumetazoa	x__Bilateria	x__Deuterostomia	p__Chordata
+0	x__root	x__cellular_organisms	k__Eukaryota	x__Opisthokonta	x__Metazoa	x__Eumetazoa	x__Bilateria	x__Deuterostomia	p__Chordata	x__Craniata
+0	x__root	x__cellular_organisms	k__Eukaryota	x__Opisthokonta	x__Metazoa	x__Eumetazoa	x__Bilateria	x__Deuterostomia	p__Chordata	x__Craniata	x__Vertebrata
+0	x__root	x__cellular_organisms	k__Eukaryota	x__Opisthokonta	x__Metazoa	x__Eumetazoa	x__Bilateria	x__Deuterostomia	p__Chordata	x__Craniata	x__Vertebrata	x__Gnathostomata
+0	x__root	x__cellular_organisms	k__Eukaryota	x__Opisthokonta	x__Metazoa	x__Eumetazoa	x__Bilateria	x__Deuterostomia	p__Chordata	x__Craniata	x__Vertebrata	x__Gnathostomata	x__Teleostomi
+0	x__root	x__cellular_organisms	k__Eukaryota	x__Opisthokonta	x__Metazoa	x__Eumetazoa	x__Bilateria	x__Deuterostomia	p__Chordata	x__Craniata	x__Vertebrata	x__Gnathostomata	x__Teleostomi	x__Euteleostomi
+0	x__root	x__cellular_organisms	k__Eukaryota	x__Opisthokonta	x__Metazoa	x__Eumetazoa	x__Bilateria	x__Deuterostomia	p__Chordata	x__Craniata	x__Vertebrata	x__Gnathostomata	x__Teleostomi	x__Euteleostomi	x__Sarcopterygii
+0	x__root	x__cellular_organisms	k__Eukaryota	x__Opisthokonta	x__Metazoa	x__Eumetazoa	x__Bilateria	x__Deuterostomia	p__Chordata	x__Craniata	x__Vertebrata	x__Gnathostomata	x__Teleostomi	x__Euteleostomi	x__Sarcopterygii	x__Dipnotetrapodomorpha
+0	x__root	x__cellular_organisms	k__Eukaryota	x__Opisthokonta	x__Metazoa	x__Eumetazoa	x__Bilateria	x__Deuterostomia	p__Chordata	x__Craniata	x__Vertebrata	x__Gnathostomata	x__Teleostomi	x__Euteleostomi	x__Sarcopterygii	x__Dipnotetrapodomorpha	x__Tetrapoda
+0	x__root	x__cellular_organisms	k__Eukaryota	x__Opisthokonta	x__Metazoa	x__Eumetazoa	x__Bilateria	x__Deuterostomia	p__Chordata	x__Craniata	x__Vertebrata	x__Gnathostomata	x__Teleostomi	x__Euteleostomi	x__Sarcopterygii	x__Dipnotetrapodomorpha	x__Tetrapoda	x__Amniota
+0	x__root	x__cellular_organisms	k__Eukaryota	x__Opisthokonta	x__Metazoa	x__Eumetazoa	x__Bilateria	x__Deuterostomia	p__Chordata	x__Craniata	x__Vertebrata	x__Gnathostomata	x__Teleostomi	x__Euteleostomi	x__Sarcopterygii	x__Dipnotetrapodomorpha	x__Tetrapoda	x__Amniota	c__Mammalia
+0	x__root	x__cellular_organisms	k__Eukaryota	x__Opisthokonta	x__Metazoa	x__Eumetazoa	x__Bilateria	x__Deuterostomia	p__Chordata	x__Craniata	x__Vertebrata	x__Gnathostomata	x__Teleostomi	x__Euteleostomi	x__Sarcopterygii	x__Dipnotetrapodomorpha	x__Tetrapoda	x__Amniota	c__Mammalia	x__Theria
+0	x__root	x__cellular_organisms	k__Eukaryota	x__Opisthokonta	x__Metazoa	x__Eumetazoa	x__Bilateria	x__Deuterostomia	p__Chordata	x__Craniata	x__Vertebrata	x__Gnathostomata	x__Teleostomi	x__Euteleostomi	x__Sarcopterygii	x__Dipnotetrapodomorpha	x__Tetrapoda	x__Amniota	c__Mammalia	x__Theria	x__Eutheria
+0	x__root	x__cellular_organisms	k__Eukaryota	x__Opisthokonta	x__Metazoa	x__Eumetazoa	x__Bilateria	x__Deuterostomia	p__Chordata	x__Craniata	x__Vertebrata	x__Gnathostomata	x__Teleostomi	x__Euteleostomi	x__Sarcopterygii	x__Dipnotetrapodomorpha	x__Tetrapoda	x__Amniota	c__Mammalia	x__Theria	x__Eutheria	x__Boreoeutheria
+0	x__root	x__cellular_organisms	k__Eukaryota	x__Opisthokonta	x__Metazoa	x__Eumetazoa	x__Bilateria	x__Deuterostomia	p__Chordata	x__Craniata	x__Vertebrata	x__Gnathostomata	x__Teleostomi	x__Euteleostomi	x__Sarcopterygii	x__Dipnotetrapodomorpha	x__Tetrapoda	x__Amniota	c__Mammalia	x__Theria	x__Eutheria	x__Boreoeutheria	x__Euarchontoglires
+0	x__root	x__cellular_organisms	k__Eukaryota	x__Opisthokonta	x__Metazoa	x__Eumetazoa	x__Bilateria	x__Deuterostomia	p__Chordata	x__Craniata	x__Vertebrata	x__Gnathostomata	x__Teleostomi	x__Euteleostomi	x__Sarcopterygii	x__Dipnotetrapodomorpha	x__Tetrapoda	x__Amniota	c__Mammalia	x__Theria	x__Eutheria	x__Boreoeutheria	x__Euarchontoglires	o__Primates
+0	x__root	x__cellular_organisms	k__Eukaryota	x__Opisthokonta	x__Metazoa	x__Eumetazoa	x__Bilateria	x__Deuterostomia	p__Chordata	x__Craniata	x__Vertebrata	x__Gnathostomata	x__Teleostomi	x__Euteleostomi	x__Sarcopterygii	x__Dipnotetrapodomorpha	x__Tetrapoda	x__Amniota	c__Mammalia	x__Theria	x__Eutheria	x__Boreoeutheria	x__Euarchontoglires	o__Primates	x__Haplorrhini
+0	x__root	x__cellular_organisms	k__Eukaryota	x__Opisthokonta	x__Metazoa	x__Eumetazoa	x__Bilateria	x__Deuterostomia	p__Chordata	x__Craniata	x__Vertebrata	x__Gnathostomata	x__Teleostomi	x__Euteleostomi	x__Sarcopterygii	x__Dipnotetrapodomorpha	x__Tetrapoda	x__Amniota	c__Mammalia	x__Theria	x__Eutheria	x__Boreoeutheria	x__Euarchontoglires	o__Primates	x__Haplorrhini	x__Simiiformes
+0	x__root	x__cellular_organisms	k__Eukaryota	x__Opisthokonta	x__Metazoa	x__Eumetazoa	x__Bilateria	x__Deuterostomia	p__Chordata	x__Craniata	x__Vertebrata	x__Gnathostomata	x__Teleostomi	x__Euteleostomi	x__Sarcopterygii	x__Dipnotetrapodomorpha	x__Tetrapoda	x__Amniota	c__Mammalia	x__Theria	x__Eutheria	x__Boreoeutheria	x__Euarchontoglires	o__Primates	x__Haplorrhini	x__Simiiformes	x__Catarrhini
+0	x__root	x__cellular_organisms	k__Eukaryota	x__Opisthokonta	x__Metazoa	x__Eumetazoa	x__Bilateria	x__Deuterostomia	p__Chordata	x__Craniata	x__Vertebrata	x__Gnathostomata	x__Teleostomi	x__Euteleostomi	x__Sarcopterygii	x__Dipnotetrapodomorpha	x__Tetrapoda	x__Amniota	c__Mammalia	x__Theria	x__Eutheria	x__Boreoeutheria	x__Euarchontoglires	o__Primates	x__Haplorrhini	x__Simiiformes	x__Catarrhini	x__Hominoidea
+0	x__root	x__cellular_organisms	k__Eukaryota	x__Opisthokonta	x__Metazoa	x__Eumetazoa	x__Bilateria	x__Deuterostomia	p__Chordata	x__Craniata	x__Vertebrata	x__Gnathostomata	x__Teleostomi	x__Euteleostomi	x__Sarcopterygii	x__Dipnotetrapodomorpha	x__Tetrapoda	x__Amniota	c__Mammalia	x__Theria	x__Eutheria	x__Boreoeutheria	x__Euarchontoglires	o__Primates	x__Haplorrhini	x__Simiiformes	x__Catarrhini	x__Hominoidea	f__Hominidae
+0	x__root	x__cellular_organisms	k__Eukaryota	x__Opisthokonta	x__Metazoa	x__Eumetazoa	x__Bilateria	x__Deuterostomia	p__Chordata	x__Craniata	x__Vertebrata	x__Gnathostomata	x__Teleostomi	x__Euteleostomi	x__Sarcopterygii	x__Dipnotetrapodomorpha	x__Tetrapoda	x__Amniota	c__Mammalia	x__Theria	x__Eutheria	x__Boreoeutheria	x__Euarchontoglires	o__Primates	x__Haplorrhini	x__Simiiformes	x__Catarrhini	x__Hominoidea	f__Hominidae	x__Homininae
+0	x__root	x__cellular_organisms	k__Eukaryota	x__Opisthokonta	x__Metazoa	x__Eumetazoa	x__Bilateria	x__Deuterostomia	p__Chordata	x__Craniata	x__Vertebrata	x__Gnathostomata	x__Teleostomi	x__Euteleostomi	x__Sarcopterygii	x__Dipnotetrapodomorpha	x__Tetrapoda	x__Amniota	c__Mammalia	x__Theria	x__Eutheria	x__Boreoeutheria	x__Euarchontoglires	o__Primates	x__Haplorrhini	x__Simiiformes	x__Catarrhini	x__Hominoidea	f__Hominidae	x__Homininae	g__Homo
+1	x__root	x__cellular_organisms	k__Eukaryota	x__Opisthokonta	x__Metazoa	x__Eumetazoa	x__Bilateria	x__Deuterostomia	p__Chordata	x__Craniata	x__Vertebrata	x__Gnathostomata	x__Teleostomi	x__Euteleostomi	x__Sarcopterygii	x__Dipnotetrapodomorpha	x__Tetrapoda	x__Amniota	c__Mammalia	x__Theria	x__Eutheria	x__Boreoeutheria	x__Euarchontoglires	o__Primates	x__Haplorrhini	x__Simiiformes	x__Catarrhini	x__Hominoidea	f__Hominidae	x__Homininae	g__Homo	s__Homo_sapiens
+0	x__root	x__cellular_organisms	k__Eukaryota	x__Sar
+0	x__root	x__cellular_organisms	k__Eukaryota	x__Sar	x__Alveolata
+0	x__root	x__cellular_organisms	k__Eukaryota	x__Sar	x__Alveolata	p__Apicomplexa
+0	x__root	x__cellular_organisms	k__Eukaryota	x__Sar	x__Alveolata	p__Apicomplexa	c__Aconoidasida
+0	x__root	x__cellular_organisms	k__Eukaryota	x__Sar	x__Alveolata	p__Apicomplexa	c__Aconoidasida	o__Haemosporida
+0	x__root	x__cellular_organisms	k__Eukaryota	x__Sar	x__Alveolata	p__Apicomplexa	c__Aconoidasida	o__Haemosporida	f__Plasmodiidae
+0	x__root	x__cellular_organisms	k__Eukaryota	x__Sar	x__Alveolata	p__Apicomplexa	c__Aconoidasida	o__Haemosporida	f__Plasmodiidae	g__Plasmodium
+0	x__root	x__cellular_organisms	k__Eukaryota	x__Sar	x__Alveolata	p__Apicomplexa	c__Aconoidasida	o__Haemosporida	f__Plasmodiidae	g__Plasmodium	x__Plasmodium_(Plasmodium)
+0	x__root	x__cellular_organisms	k__Eukaryota	x__Sar	x__Alveolata	p__Apicomplexa	c__Aconoidasida	o__Haemosporida	f__Plasmodiidae	g__Plasmodium	x__Plasmodium_(Plasmodium)	s__Plasmodium_knowlesi
+1	x__root	x__cellular_organisms	k__Eukaryota	x__Sar	x__Alveolata	p__Apicomplexa	c__Aconoidasida	o__Haemosporida	f__Plasmodiidae	g__Plasmodium	x__Plasmodium_(Plasmodium)	s__Plasmodium_knowlesi	x__Plasmodium_knowlesi_strain_H