# HG changeset patch
# User jvolkening
# Date 1566593918 14400
# Node ID 858504cdf67cb2da4e6a26f13a379b63ae03b90b
# Parent  aa75dcf4cd74886199bc05c74d821610a4b1faae
planemo upload for repository https://github.com/jvolkening/galaxy-tools/tree/master/tools/mira3 commit 7e41142050e4afb3d32570444c904a11b9d0c913

diff -r aa75dcf4cd74 -r 858504cdf67c LICENSE
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/LICENSE	Fri Aug 23 16:58:38 2019 -0400
@@ -0,0 +1,19 @@
+MIT License
+
+Permission is hereby granted, free of charge, to any person obtaining a copy
+of this software and associated documentation files (the "Software"), to deal
+in the Software without restriction, including without limitation the rights
+to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
+copies of the Software, and to permit persons to whom the Software is
+furnished to do so, subject to the following conditions:
+
+The above copyright notice and this permission notice shall be included in all
+copies or substantial portions of the Software.
+
+THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
+IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
+FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
+AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
+LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
+OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE
+SOFTWARE.
diff -r aa75dcf4cd74 -r 858504cdf67c mira3.xml
--- a/mira3.xml	Fri Aug 23 00:30:33 2019 -0400
+++ b/mira3.xml	Fri Aug 23 16:58:38 2019 -0400
@@ -261,6 +261,28 @@
 
 It is particularly suited to small genomes such as bacteria.
 
+**Citation**
+
+This tool was forked from the original by Peter J. Cock:
+
+http://toolshed.g2.bx.psu.edu/view/peterjc/mira_assembler
+
+https://github.com/peterjc/galaxy_mira/tree/master/tools/mira3
+
+
+If you use this Galaxy tool in work leading to a scientific publication please
+cite the following papers:
+
+Peter J.A. Cock, Björn A. Grüning, Konrad Paszkiewicz and Leighton Pritchard (2013).
+Galaxy tools and workflows for sequence analysis with applications
+in molecular plant pathology. PeerJ 1:e167
+https://doi.org/10.7717/peerj.167
+
+Bastien Chevreux, Thomas Wetter and Sándor Suhai (1999).
+Genome Sequence Assembly Using Trace Signals and Additional Sequence Information.
+Computer Science and Biology: Proceedings of the German Conference on Bioinformatics (GCB) 99, pp. 45-56.
+http://www.bioinfo.de/isb/gcb99/talks/chevreux/main.html
+
     </help>
 
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