Mercurial > repos > jvolkening > nanopore_qc

annotate README.md @ 2:5c7848b91964 draft default tip

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload for repository https://github.com/jvolkening/galaxy-tools/tree/master/tools/nanopore_qc commit efc73adf2038b9c6504c60f35202e91dbc7f4d48-dirty
author jvolkening
date Sat, 02 Mar 2024 05:33:33 +0000
parents e0006d8bf849
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
0
e0006d8bf849 planemo upload for repository https://github.com/jvolkening/galaxy-tools/tree/master/tools/nanopore_qc commit b99a7d95d62b95ececc9d808f5f183b9eb718f80-dirty
jvolkening
parents:
diff changeset
1 # Quality control for nanopore sequencing data
e0006d8bf849 planemo upload for repository https://github.com/jvolkening/galaxy-tools/tree/master/tools/nanopore_qc commit b99a7d95d62b95ececc9d808f5f183b9eb718f80-dirty
jvolkening
parents:
diff changeset
2
e0006d8bf849 planemo upload for repository https://github.com/jvolkening/galaxy-tools/tree/master/tools/nanopore_qc commit b99a7d95d62b95ececc9d808f5f183b9eb718f80-dirty
jvolkening
parents:
diff changeset
3 `NanoporeQC` is a Galaxy tool for quality control of data from Oxford Nanopore
e0006d8bf849 planemo upload for repository https://github.com/jvolkening/galaxy-tools/tree/master/tools/nanopore_qc commit b99a7d95d62b95ececc9d808f5f183b9eb718f80-dirty
jvolkening
parents:
diff changeset
4 sequencers. It utilizes the summary table produced by Albacore or Guppy to
e0006d8bf849 planemo upload for repository https://github.com/jvolkening/galaxy-tools/tree/master/tools/nanopore_qc commit b99a7d95d62b95ececc9d808f5f183b9eb718f80-dirty
jvolkening
parents:
diff changeset
5 generate QC statistics and plots.
e0006d8bf849 planemo upload for repository https://github.com/jvolkening/galaxy-tools/tree/master/tools/nanopore_qc commit b99a7d95d62b95ececc9d808f5f183b9eb718f80-dirty
jvolkening
parents:
diff changeset
6
e0006d8bf849 planemo upload for repository https://github.com/jvolkening/galaxy-tools/tree/master/tools/nanopore_qc commit b99a7d95d62b95ececc9d808f5f183b9eb718f80-dirty
jvolkening
parents:
diff changeset
7 ## Attributions
e0006d8bf849 planemo upload for repository https://github.com/jvolkening/galaxy-tools/tree/master/tools/nanopore_qc commit b99a7d95d62b95ececc9d808f5f183b9eb718f80-dirty
jvolkening
parents:
diff changeset
8
e0006d8bf849 planemo upload for repository https://github.com/jvolkening/galaxy-tools/tree/master/tools/nanopore_qc commit b99a7d95d62b95ececc9d808f5f183b9eb718f80-dirty
jvolkening
parents:
diff changeset
9 `NanoporeQC` was originally forked from the `minion_qc` codebase
e0006d8bf849 planemo upload for repository https://github.com/jvolkening/galaxy-tools/tree/master/tools/nanopore_qc commit b99a7d95d62b95ececc9d808f5f183b9eb718f80-dirty
jvolkening
parents:
diff changeset
10 ([https://github.com/roblanf/minion_qc](https://github.com/roblanf/minion_qc))
e0006d8bf849 planemo upload for repository https://github.com/jvolkening/galaxy-tools/tree/master/tools/nanopore_qc commit b99a7d95d62b95ececc9d808f5f183b9eb718f80-dirty
jvolkening
parents:
diff changeset
11