Mercurial > repos > kaymccoy > enhanced_bowtie_mapper

diff bowtie_in2.fastqsanger @ 12:9885002db8f8 draft

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author kaymccoy
date Sun, 07 Aug 2016 22:31:23 -0400
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/bowtie_in2.fastqsanger	Sun Aug 07 22:31:23 2016 -0400
@@ -0,0 +1,104 @@
+@HWI-EAS91_1_30788AAXX:1:1:1513:715/1
+GTTTTTTGGGCATAGATGTTTAGTTGTGGTAGTCAG
++
+IIIIIII""IIIIIIIIIIIIIIIIIIIDI?II-+I
+@HWI-EAS91_1_30788AAXX:1:1:1698:516/1
+GTTGTTAGGGAGAGGAGTTGAACCTCTGAGTGTAAA
++
+IIIIIII""IIIIIIIIIIIIIIIIIII5IIIII9I
+@HWI-EAS91_1_30788AAXX:1:1:1491:637/1
+GCTAGCAGGATGGATCCGGCAATTGGGGCTTCTACA
++
+IIIIIII""IIIIIIIIIIIIFIIIIIIIIIIIABD
+@HWI-EAS91_1_30788AAXX:1:1:1711:249/1
+GGAAGTAGGGGCCTGCGTTCAGGCGTTCTGTTTGGT
++
+IIIIIII""IIIIIIIIIIIIIIIIIIIIIIIIIII
+@HWI-EAS91_1_30788AAXX:1:1:1634:211/1
+GAAGCAGGGGCTTGATACTGACACTTCGTCGACGTA
++
+IIIIIII""IIIIIIIIIIIIIIIIIIIIII9IIDF
+@HWI-EAS91_1_30788AAXX:1:1:1218:141/1
+GTTAAATATTGGGAGTGGGGGGGGGGGGGAGTTTTG
++
+IIIIIII""IIIIIIIIIIIIIIIIIIII1IIII+I
+@HWI-EAS91_1_30788AAXX:1:1:1398:854/1
+GTGAAGAGGAGGGGATTTATTAGTACGGGAAGGGTG
++
+IIIIIII""IIIIIBIIIIIIIIIIIIIIA=IIIII
+@HWI-EAS91_1_30788AAXX:1:1:1310:991/1
+GAATAGTGGTAGTATTATTCCTTCTAGGCATAGGAG
++
+IIIIIII""IIIIIIIIII4IIIIIIDII:IEI2:I
+@HWI-EAS91_1_30788AAXX:1:1:1716:413/1
+GATCCAAGGCTTTATCAACACCTATTCTGATTCTTC
++
+IIIIIII""IIIIIIIIIIIIIIIIIIIIIIIIIII
+@HWI-EAS91_1_30788AAXX:1:1:1630:59/1
+GGAGCGGGGGGTTGGTAAGGTTGGGGTCGAGTATGA
++
+IIIIIII""IIIIIIIIIIIIIIIIIIII;IIHIIF
+@HWI-EAS91_1_30788AAXX:1:1:1601:805/1
+GAAAACAGGAAAACAATCCAGTCACTTACCCTATGC
++
+IIIIIII""IIIIIIIIIIIIIIIIIIIIIII@III
+@HWI-EAS91_1_30788AAXX:1:1:1663:724/1
+GTTTGCCGGCGCCATCCTACGCTCCATTCCCAACAA
++
+IIIIIII""IIII8IIIIIIHIIII6IIIII1CI=3
+@HWI-EAS91_1_30788AAXX:1:1:1454:975/1
+GCTAGGCGGGAGTGGTAAAAGGCTCAGAAGAAGCCA
++
+IIIIIII""IIIIIIIIIIIIIIIIEIG;IIIIIII
+@HWI-EAS91_1_30788AAXX:1:1:1461:255/1
+GTACACCGGCGCCTGAGCCCTACTAATAACTCTCAT
++
+IIIIIII""IIIIII9IIIIIIEI(II9.I4III,I
+@HWI-EAS91_1_30788AAXX:1:1:1775:764/1
+GCATCCCGGTAGATCTAATTTTCTAAATCTGTCAAC
++
+IIIIIII""III@IIII+IIIIII8H8IIIIIIICI
+@HWI-EAS91_1_30788AAXX:1:1:1269:520/1
+GGAGTATGGAATAAGTGATTTTAGATCGGTTTGTCG
++
+IIIIIII""IIIIIIIIIIIIIIIIIIIIIIIIIII
+@HWI-EAS91_1_30788AAXX:1:1:1303:1162/1
+GAGCAAGGGCAGGAGGAGGAGTCCTAGGATGTCTTT
++
+IIIIIII""IIIIFII4*IGIAI(IAII49',3I6I
+@HWI-EAS91_1_30788AAXX:1:1:1090:409/1
+GTTTGTTGGGAATGGAGCGTAGGATGGCGTAGGCAA
++
+IIIIIII""IIIIIIIIIIIIIIIIIIIII:IIA8I
+@HWI-EAS91_1_30788AAXX:1:1:1336:1000/1
+GGTAAATGGGAAATATTAAGTTTCTGTTTCTAGATC
++
+IIIIIII""IIIIIIIIIIIIIIIIIIIIIIII9II
+@HWI-EAS91_1_30788AAXX:1:1:1199:1376/1
+GTTTTCTGGAAAACCTTCACCTATTTATGGGGGTTT
++
+IIIIIII""IIIIIIIIIIIII;III3IIG&:/III
+@HWI-EAS91_1_30788AAXX:1:1:1598:1148/1
+GATCAATGGTTTGGATCAATAAGTGATTATATATTT
++
+IIIIIII""IIIIIDIIIIII?IIICII=IHIIIII
+@HWI-EAS91_1_30788AAXX:1:1:1723:1459/1
+GAAACCCGGACGTTTGGATGGGCCCGGAGCGAGGAT
++
+IIIIIII""IIIIIIIIDIIIIIIIII9HII-II=I
+@HWI-EAS91_1_30788AAXX:1:1:1442:1346/1
+TATCAAGGGGCTGCTTCGAATCCGAAGTGGTGGCTG
++
+IIIIIII""IIIIIDIIIII1I(I4II<?<-II*,&
+@HWI-EAS91_1_30788AAXX:1:1:850:117/1
+GTATGACGGTAAAGAAAATTATTACGAATGCATGGG
++
+IIIIIII""IIIIIIEIEIIIIIIIIEBIDD9I;:?
+@HWI-EAS91_1_30788AAXX:1:1:795:325/1
+GGGTACTGGGAAGTGGAATGGTGTGAGTCCAAGTTT
++
+IIIIIII""IIIIIIIIIIIIIIIIIIIII65IIII
+@HWI-EAS91_1_30788AAXX:1:1:873:453/1
+GAGTAGGGGGATTGCTAGAGTTACTTCGTATGAGAT
++
+IIIIIII""IIIIIIIIIIIIIIIII@IIIIIII=I