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comparison cluster3.xml @ 1:e1bc1519822b draft default tip

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Fixing file format types
author kellrott
date Wed, 07 Nov 2012 18:34:15 -0500
parents cdcb3276c0e1
children
comparison
equal deleted inserted replaced
0:cdcb3276c0e1 1:e1bc1519822b
1 <tool id="cluster3" name="Cluster 3" version="1.0.0"> 1 <tool id="cluster3" name="Cluster 3" version="1.0.1">
2 <description>Cluster 3.0</description> 2 <description>Cluster 3.0</description>
3 <command interpreter="python">$scriptfile</command> 3 <command interpreter="python">$scriptfile</command>
4 <inputs> 4 <inputs>
5 <param name="filename" type="data" format="tab" label="Matrix"/> 5 <param name="filename" type="data" format="tabular" label="Matrix"/>
6 <param name="row_center" type="select" label="Row Center (gene)"> 6 <param name="row_center" type="select" label="Row Center (gene)">
7 <option value="x">No row Center</option> 7 <option value="x">No row Center</option>
8 <option value="a">Substact mean of row</option> 8 <option value="a">Substact mean of row</option>
9 <option value="m">Substact median of row</option> 9 <option value="m">Substact median of row</option>
10 </param> 10 </param>
75 </when> 75 </when>
76 </conditional> 76 </conditional>
77 77
78 </inputs> 78 </inputs>
79 <outputs> 79 <outputs>
80 <data name="cdtfile" format="cdt" label="CDT File"> 80 <data format="txt" name="cdtfile" label="CDT File">
81 <filter>cparam['run_mode'] == "clustering"</filter> 81 <filter>cparam['run_mode'] == "clustering"</filter>
82 </data> 82 </data>
83 <data format="atr" name="atrfile" label="ATR File"> 83 <data format="txt" name="atrfile" label="ATR File">
84 <filter>cparam['run_mode'] == "clustering" and cparam['cluster_mode']['mode_name'] == "hierarchical" and cparam['col_distance'] != "0"</filter> 84 <filter>cparam['run_mode'] == "clustering" and cparam['cluster_mode']['mode_name'] == "hierarchical" and cparam['col_distance'] != "0"</filter>
85 </data> 85 </data>
86 <data format="gtr" name="gtrfile" label="GTR File"> 86 <data format="txt" name="gtrfile" label="GTR File">
87 <filter>cparam['run_mode'] == "clustering" and cparam['cluster_mode']['mode_name'] == "hierarchical" and cparam['row_distance'] != "0"</filter> 87 <filter>cparam['run_mode'] == "clustering" and cparam['cluster_mode']['mode_name'] == "hierarchical" and cparam['row_distance'] != "0"</filter>
88 </data> 88 </data>
89 <data format="txt" name="kagfile" label="KAG File"> 89 <data format="txt" name="kagfile" label="KAG File">
90 <filter>cparam['run_mode'] == "clustering" and cparam['cluster_mode']['mode_name'] == "kmeans" and cparam['col_distance'] != "0"</filter> 90 <filter>cparam['run_mode'] == "clustering" and cparam['cluster_mode']['mode_name'] == "kmeans" and cparam['col_distance'] != "0"</filter>
91 </data> 91 </data>