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comparison couchdb_client.xml @ 0:907b95ba9cf7 draft

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author kellrott
date Tue, 24 Jul 2012 17:40:26 -0400
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1 <tool id="couchdb_client" name="CouchDB Client" version="1.0.0">
2 <description>CouchDB Client</description>
3 <command interpreter="python">$scriptfile</command>
4 <inputs>
5 <param name="url" type="text" size="128" label="Server URL"/>
6 <param name="db" type="text" size="32" label="Database"/>
7 <param name="query" type="text" area="True" size="5x25" label="Query">
8 <sanitizer>
9 <valid initial="string.printable"/>
10 <mapping initial="none">
11 <add source="&#10;" target="__cn__"/>
12 <add source="&quot;" target="__dq__"/>
13 </mapping>
14 </sanitizer>
15 </param>
16 </inputs>
17 <outputs>
18 <data name="output" format="txt"/>
19 </outputs>
20 <configfiles>
21
22 <configfile name="scriptfile"><![CDATA[#!/usr/bin/env python
23 import couchdb.client
24 import json
25 import galaxy.eggs
26 import galaxy.util
27
28 server = couchdb.client.Server(galaxy.util.restore_text("$url"))
29 db = server['$db']
30
31 query=galaxy.util.restore_text("""$query""")
32 print query
33 result = db.query(query)
34 print result
35 handle = open(galaxy.util.restore_text("$output"), "w")
36 for row in result:
37 handle.write("{\"key\":%s, \"value\":%s}\n" % (json.dumps(row.key), json.dumps(row.value)))
38 handle.close()
39
40 ]]></configfile>
41 </configfiles>
42 <help>
43
44
45 </help>
46 </tool>