Mercurial > repos > kevyin > fastq_groomer_parallel
diff README @ 0:18a08d476d5e
First upload 0.3.0
author | kevyin |
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date | Fri, 14 Sep 2012 01:18:16 -0400 |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/README Fri Sep 14 01:18:16 2012 -0400 @@ -0,0 +1,32 @@ +Copyright (c) 2012, Kenneth Sabir +All rights reserved. + +Redistribution and use in source and binary forms, with or without modification, are permitted provided that the following conditions are met: + + Redistributions of source code must retain the above copyright notice, this list of conditions and the following disclaimer. + Redistributions in binary form must reproduce the above copyright notice, this list of conditions and the following disclaimer in the + documentation and/or other materials provided with the distribution. + Neither the name of the Garvan Institute nor the names of its contributors may be used to endorse or promote products derived from this + software without specific prior written permission. + +THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, +THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDER OR CONTRIBUTORS +BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE +GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT +LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF +SUCH DAMAGE. + +################################################## +Installation: +#================================================# + +Set the number of threads to use edit fastq_groomer_parallel.xml: +Modify the last argument in the <command> tag, Default is 2 + + +Tested on -r e6444e7a1685 +This currently depends on the following galaxy_utils python library which should come with the default galaxy install + +More info: + from galaxy_utils.sequence.fastq import fastqReader, fastqVerboseErrorReader, fastqAggregator, fastqWriter +##################################################