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date Sun, 27 Apr 2014 02:17:09 -0400
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Copyright (c) 2012, Kenneth Sabir
All rights reserved.

Redistribution and use in source and binary forms, with or without modification, are permitted provided 
that the following conditions are met:

    - Redistributions of source code must retain the above copyright notice, this list of conditions and 
        the following disclaimer.
    - Redistributions in binary form must reproduce the above copyright notice, this list of conditions and 
        the following disclaimer in the documentation and/or other materials provided with the distribution.
    - Neither the name of the Garvan Institute nor the names of its contributors may be used to endorse 
        or promote products derived from this software without specific prior written permission.

THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, 
INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE 
ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDER OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, 
INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF 
SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY 
THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING 
IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.

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INSTALLATION:
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Set the number of threads to use by editing: 
fastq_groomer_parallel.xml:
Modify the last argument in the <command> tag, Default is 8

Tested on galaxy-dist -r e6444e7a1685
This currently depends on the following galaxy_utils python library which should come with the default galaxy install

More info:
    from galaxy_utils.sequence.fastq import fastqReader, fastqVerboseErrorReader, fastqAggregator, fastqWriter
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