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16
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1 <?xml version="1.0"?>
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2 <tool_dependency>
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3 <package name="homer" version="4.1">
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4 <install version="4.1">
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5 <actions>
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6 <action type="download_by_url">http://biowhat.ucsd.edu/homer/configureHomer.pl</action>
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7 <action type="shell_command">perl ./configureHomer.pl -install</action>
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8 <action type="shell_command">perl ./configureHomer.pl -install hg19</action>
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9 <action type="move_directory_files">
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10 <source_directory>./</source_directory>
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11 <destination_directory>$INSTALL_DIR</destination_directory>
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12 </action>
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13 <action type="set_environment">
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14 <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable>
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15 </action>
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16 </actions>
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17 </install>
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18 <readme>
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19 Installs homer
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20 </readme>
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21 </package>
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22 </tool_dependency>
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23
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