annotate tool_dependencies.xml @ 28:f0b5827b6051 draft default tip

Uploaded
author kevyin
date Thu, 20 Dec 2012 18:28:03 -0500
parents b6ea27745c45
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
25
b6ea27745c45 Uploaded
kevyin
parents:
diff changeset
1 <?xml version="1.0"?>
b6ea27745c45 Uploaded
kevyin
parents:
diff changeset
2 <tool_dependency>
b6ea27745c45 Uploaded
kevyin
parents:
diff changeset
3 <package name="homer" version="4.1">
b6ea27745c45 Uploaded
kevyin
parents:
diff changeset
4 <install version="4.1">
b6ea27745c45 Uploaded
kevyin
parents:
diff changeset
5 <actions>
b6ea27745c45 Uploaded
kevyin
parents:
diff changeset
6 <action type="download_by_url">http://biowhat.ucsd.edu/homer/configureHomer.pl</action>
b6ea27745c45 Uploaded
kevyin
parents:
diff changeset
7 <action type="shell_command">perl ./configureHomer.pl -install</action>
b6ea27745c45 Uploaded
kevyin
parents:
diff changeset
8 <!--<action type="shell_command">perl ./configureHomer.pl -install hg19</action>-->
b6ea27745c45 Uploaded
kevyin
parents:
diff changeset
9 <action type="move_directory_files">
b6ea27745c45 Uploaded
kevyin
parents:
diff changeset
10 <source_directory>./</source_directory>
b6ea27745c45 Uploaded
kevyin
parents:
diff changeset
11 <destination_directory>$INSTALL_DIR</destination_directory>
b6ea27745c45 Uploaded
kevyin
parents:
diff changeset
12 </action>
b6ea27745c45 Uploaded
kevyin
parents:
diff changeset
13 <action type="set_environment">
b6ea27745c45 Uploaded
kevyin
parents:
diff changeset
14 <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable>
b6ea27745c45 Uploaded
kevyin
parents:
diff changeset
15 </action>
b6ea27745c45 Uploaded
kevyin
parents:
diff changeset
16 </actions>
b6ea27745c45 Uploaded
kevyin
parents:
diff changeset
17 </install>
b6ea27745c45 Uploaded
kevyin
parents:
diff changeset
18 <readme>
b6ea27745c45 Uploaded
kevyin
parents:
diff changeset
19 I'm sorry but this does not work
b6ea27745c45 Uploaded
kevyin
parents:
diff changeset
20
b6ea27745c45 Uploaded
kevyin
parents:
diff changeset
21 </readme>
b6ea27745c45 Uploaded
kevyin
parents:
diff changeset
22 </package>
b6ea27745c45 Uploaded
kevyin
parents:
diff changeset
23 </tool_dependency>
b6ea27745c45 Uploaded
kevyin
parents:
diff changeset
24