Mercurial > repos > kevyin > homer

comparison tool_dependencies.xml @ 25:b6ea27745c45 draft

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author kevyin
date Thu, 20 Dec 2012 18:25:12 -0500
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24:b3b65304ee72 25:b6ea27745c45
1 <?xml version="1.0"?>
2 <tool_dependency>
3 <package name="homer" version="4.1">
4 <install version="4.1">
5 <actions>
6 <action type="download_by_url">http://biowhat.ucsd.edu/homer/configureHomer.pl</action>
7 <action type="shell_command">perl ./configureHomer.pl -install</action>
8 <!--<action type="shell_command">perl ./configureHomer.pl -install hg19</action>-->
9 <action type="move_directory_files">
10 <source_directory>./</source_directory>
11 <destination_directory>$INSTALL_DIR</destination_directory>
12 </action>
13 <action type="set_environment">
14 <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable>
15 </action>
16 </actions>
17 </install>
18 <readme>
19 I'm sorry but this does not work
20
21 </readme>
22 </package>
23 </tool_dependency>
24