<?xml version="1.0"?>
<tool_dependency>
  <package name="homer" version="4.1">
    <install version="4.1">
      <actions>
        <action type="download_by_url">http://biowhat.ucsd.edu/homer/configureHomer.pl</action>
        <action type="shell_command">perl ./configureHomer.pl -install</action>
        <!--<action type="shell_command">perl ./configureHomer.pl -install hg19</action>-->
        <action type="move_directory_files">
          <source_directory>./</source_directory>
          <destination_directory>$INSTALL_DIR</destination_directory>
        </action>
        <action type="set_environment">
          <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable>
        </action>
      </actions>
    </install>
    <readme>
      I'm sorry but this does not work
      
    </readme>
  </package>
</tool_dependency>