Mercurial > repos > kevyin > homer
view pos2bed.xml @ 10:7efeace8bd32 draft
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author | kevyin |
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date | Mon, 17 Dec 2012 00:22:39 -0500 |
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<tool id="homer_pos2bed" name="homer_pos2bed" version="0.0.3"> <requirements> <requirement type="package">homer</requirement> </requirements> <description></description> <!--<version_command></version_command>--> <command> pos2bed.pl $input_peak 1> $out_bed 2> $out_log || echo "Error running pos2bed." >&2 </command> <inputs> <param format="tabular" name="input_peak" type="data" label="Homer peak positions" /> </inputs> <outputs> <!--<data format="html" name="html_outfile" label="index" />--> <!--<data format="html" hidden="True" name="html_outfile" label="index.html" />--> <data format="bed" name="out_bed" label="${tool.name} on #echo os.path.splitext(str($input_peak.name))[0]#.bed" /> <data format="txt" name="out_log" label="${tool.name} on #echo os.path.splitext(str($input_peak.name))[0]#.log" /> </outputs> <tests> <test> <!--<param name="input_file" value="extract_genomic_dna.fa" />--> <!--<output name="html_file" file="sample_output.html" ftype="html" />--> </test> </tests> <help> .. class:: infomark Converts: homer peak positions -(to)-> BED format **Homer pos2bed.pl** http://biowhat.ucsd.edu/homer/ngs/miscellaneous.html </help> </tool>