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1 Meme-chip wrapper for Galaxy
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2
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3 =========================================:
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4 ========Installation instructions========:
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5 =========================================:
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6 The tool_dependencies.xml can attempt to install meme in a folder specific for this tool.
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7 (such as bwa_wrappers)
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8
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9 The procedure does NOT download motif databases you will need to download them yourself
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10
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11 Meme-chip assumes the meme tools are in PATH.
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12 Make sure meme is accessible
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13
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14
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15 ========Tool data table conf========
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16 Check the meme_chip_motifs entry is in tool_data_table_conf.xml
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17
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18 ========Tool loc file========
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19
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20 Example in tool-data/meme_chip_motifs.loc.sample
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21 Entries come from the motif_db.csv in the motif database folder
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22
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23 make sure:
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24 - 3 cols
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25 - tab delimited
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26 - paths are correct
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27
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28 There is a script to convert the csv to the loc format here:
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29 https://bitbucket.org/gvl/meme-chip/src
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30 After running delete the loc entries with multiple paths eg. All Vertebrates
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31
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32
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33 =========================================:
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34 LICENSE for this wrapper:
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35 =========================================:
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36 Kevin Ying
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37 Garvan Institute: http://www.garvan.org.au
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38 GVL: https://genome.edu.au/wiki/GVL
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39
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40 http://opensource.org/licenses/mit-license.php
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