comparison meme_chip-06a47bbf8b4e/README @ 0:0814784ad7de draft

Uploaded v1.0.0 from testtoolshed
author kevyin
date Tue, 06 Nov 2012 22:51:20 -0500
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1 Meme-chip wrapper for Galaxy
2
3 ========Installation instructions========:
4 First make sure meme is installed and accessible from the command line.
5 Meme-chip assumes the meme tools are in PATH.
6
7 ========Tool data table conf========
8 Add the entry from the sample to tool_data_table_conf.xml
9
10 ========Tool loc file========
11
12 Example in tool-data/meme_chip_motifs.loc.sample
13 Entries come from the motif_db.csv in the motif database folder
14
15 make sure:
16 - 3 cols
17 - tab delimited
18 - paths are correct
19
20 There is a script to convert the csv to the loc format here:
21 https://bitbucket.org/gvl/meme-chip/src
22 After running delete the loc entries with multiple paths eg. All Vertebrates
23
24
25 LICENSE for this wrapper:
26 Kevin Ying
27 Garvan Institute http://www.garvan.org.au
28 GVL https://genome.edu.au/wiki/GVL
29
30 http://opensource.org/licenses/mit-license.php