Mercurial > repos > kevyin > meme_chip
comparison meme_chip-06a47bbf8b4e/README @ 0:0814784ad7de draft
Uploaded v1.0.0 from testtoolshed
author | kevyin |
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date | Tue, 06 Nov 2012 22:51:20 -0500 |
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1 Meme-chip wrapper for Galaxy | |
2 | |
3 ========Installation instructions========: | |
4 First make sure meme is installed and accessible from the command line. | |
5 Meme-chip assumes the meme tools are in PATH. | |
6 | |
7 ========Tool data table conf======== | |
8 Add the entry from the sample to tool_data_table_conf.xml | |
9 | |
10 ========Tool loc file======== | |
11 | |
12 Example in tool-data/meme_chip_motifs.loc.sample | |
13 Entries come from the motif_db.csv in the motif database folder | |
14 | |
15 make sure: | |
16 - 3 cols | |
17 - tab delimited | |
18 - paths are correct | |
19 | |
20 There is a script to convert the csv to the loc format here: | |
21 https://bitbucket.org/gvl/meme-chip/src | |
22 After running delete the loc entries with multiple paths eg. All Vertebrates | |
23 | |
24 | |
25 LICENSE for this wrapper: | |
26 Kevin Ying | |
27 Garvan Institute http://www.garvan.org.au | |
28 GVL https://genome.edu.au/wiki/GVL | |
29 | |
30 http://opensource.org/licenses/mit-license.php |