Mercurial > repos > kevyin > meme_chip
comparison README @ 11:dd79316654f6 draft
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| author | kevyin |
|---|---|
| date | Wed, 07 Nov 2012 23:55:31 -0500 |
| parents | 1e428d8defbc |
| children | c3e0e0a0ae09 |
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| 10:c257eb0d4af0 | 11:dd79316654f6 |
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| 1 Meme-chip wrapper for Galaxy | |
| 2 | |
| 3 ========Installation instructions========: | |
| 4 First make sure meme is installed and accessible from the command line. | |
| 5 Meme-chip assumes the meme tools are in PATH. | |
| 6 | |
| 7 ========Tool data table conf======== | |
| 8 Check the entry is in tool_data_table_conf.xml | |
| 9 | |
| 10 ========Tool loc file======== | |
| 11 | |
| 12 Example in tool-data/meme_chip_motifs.loc.sample | |
| 13 Entries come from the motif_db.csv in the motif database folder | |
| 14 | |
| 15 make sure: | |
| 16 - 3 cols | |
| 17 - tab delimited | |
| 18 - paths are correct | |
| 19 | |
| 20 There is a script to convert the csv to the loc format here: | |
| 21 https://bitbucket.org/gvl/meme-chip/src | |
| 22 After running delete the loc entries with multiple paths eg. All Vertebrates | |
| 23 | |
| 24 | |
| 25 LICENSE for this wrapper: | |
| 26 Kevin Ying | |
| 27 Garvan Institute http://www.garvan.org.au | |
| 28 GVL https://genome.edu.au/wiki/GVL | |
| 29 | |
| 30 http://opensource.org/licenses/mit-license.php |