Mercurial > repos > kevyin > meme_chip
diff README @ 9:1e428d8defbc draft
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author | kevyin |
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date | Wed, 07 Nov 2012 01:24:20 -0500 |
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children | c3e0e0a0ae09 |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/README Wed Nov 07 01:24:20 2012 -0500 @@ -0,0 +1,30 @@ +Meme-chip wrapper for Galaxy + +========Installation instructions========: +First make sure meme is installed and accessible from the command line. +Meme-chip assumes the meme tools are in PATH. + +========Tool data table conf======== +Check the entry is in tool_data_table_conf.xml + +========Tool loc file======== + +Example in tool-data/meme_chip_motifs.loc.sample +Entries come from the motif_db.csv in the motif database folder + +make sure: +- 3 cols +- tab delimited +- paths are correct + +There is a script to convert the csv to the loc format here: +https://bitbucket.org/gvl/meme-chip/src +After running delete the loc entries with multiple paths eg. All Vertebrates + + +LICENSE for this wrapper: +Kevin Ying +Garvan Institute http://www.garvan.org.au +GVL https://genome.edu.au/wiki/GVL + +http://opensource.org/licenses/mit-license.php