--- a/README	Mon Nov 12 01:17:03 2012 -0500
+++ b/README	Mon Nov 12 19:34:55 2012 -0500
@@ -1,11 +1,19 @@
 Meme-chip wrapper for Galaxy
 
+=========================================:
 ========Installation instructions========:
-First make sure meme is installed and accessible from the command line.
+=========================================:
+The tool_dependencies.xml can attempt to install meme in a folder specific for this tool.
+(such as bwa_wrappers)
+
+The procedure does NOT download motif databases you will need to download them yourself
+
 Meme-chip assumes the meme tools are in PATH.
+Make sure meme is accessible
+
 
 ========Tool data table conf========
-Check the entry is in tool_data_table_conf.xml
+Check the meme_chip_motifs entry is in tool_data_table_conf.xml
 
 ========Tool loc file========
 
@@ -22,9 +30,11 @@
 After running delete the loc entries with multiple paths eg. All Vertebrates
 
 
+=========================================:
 LICENSE for this wrapper: 
+=========================================:
 Kevin Ying
-Garvan Institute http://www.garvan.org.au
-GVL https://genome.edu.au/wiki/GVL
+Garvan Institute: http://www.garvan.org.au
+GVL: https://genome.edu.au/wiki/GVL
 
 http://opensource.org/licenses/mit-license.php