Mercurial > repos > kevyin > meme_chip
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author | kevyin |
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date | Tue, 06 Nov 2012 22:51:20 -0500 |
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Meme-chip wrapper for Galaxy ========Installation instructions========: First make sure meme is installed and accessible from the command line. Meme-chip assumes the meme tools are in PATH. ========Tool data table conf======== Add the entry from the sample to tool_data_table_conf.xml ========Tool loc file======== Example in tool-data/meme_chip_motifs.loc.sample Entries come from the motif_db.csv in the motif database folder make sure: - 3 cols - tab delimited - paths are correct There is a script to convert the csv to the loc format here: https://bitbucket.org/gvl/meme-chip/src After running delete the loc entries with multiple paths eg. All Vertebrates LICENSE for this wrapper: Kevin Ying Garvan Institute http://www.garvan.org.au GVL https://genome.edu.au/wiki/GVL http://opensource.org/licenses/mit-license.php