Mercurial > repos > koen > gbsx
comparison test-data/chr21.l150.apeki.txt @ 22:062399f3787f draft
new version of gbsx: v1.2 with barcodeGenerator, demultiplex and digest
| author | koen |
|---|---|
| date | Tue, 26 Jan 2016 07:38:36 -0500 |
| parents | |
| children |
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| 21:32ee036c156a | 22:062399f3787f |
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| 1 input parameters: | |
| 2 enzyme name used: ApeKI | |
| 3 enzyme cut sequence: G^CWGC | |
| 4 for bedfile, genome name used: genome | |
| 5 read length provided: 150 | |
| 6 minimum fragment size: 100 | |
| 7 maximum fragment size: 1000 | |
| 8 | |
| 9 reference sequence(s) analyzed: | |
| 10 chr21.fa | |
| 11 | |
| 12 total cuts for enzyme (ApeKI): 62623 | |
| 13 | |
| 14 looked at 62624 fragments in total | |
| 15 35553 fragments <= 1000 nt and >= 100 nt | |
| 16 fragments in range per reference sequence: | |
| 17 chr21 had 35553 fragments | |
| 18 distances between fragments in range: | |
| 19 <=1kb 28216 fragment pairs | |
| 20 1kb-10kb 7209 fragment pairs | |
| 21 10kb-100kb 125 fragment pairs | |
| 22 100kb-1Mb 1 fragment pairs | |
| 23 1Mb-10Mb 1 fragment pairs | |
| 24 >10Mb 0 fragment pairs | |
| 25 fragments less than 100 nt: 16329 | |
| 26 | |
| 27 fragments 100-199 nt: 9755 | |
| 28 fragments 200-299 nt: 6571 | |
| 29 fragments 300-399 nt: 4853 | |
| 30 fragments 400-499 nt: 3701 | |
| 31 fragments 500-599 nt: 2936 | |
| 32 fragments 600-699 nt: 2430 | |
| 33 fragments 700-799 nt: 2004 | |
| 34 fragments 800-899 nt: 1789 | |
| 35 fragments 900-999 nt: 1496 | |
| 36 |