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comparison gbsx_barcodeGenerator.sh @ 19:84737a8fddb0 draft

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author koen
date Wed, 13 Jan 2016 11:47:27 -0500
parents 331f373e5c22
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18:efd8c94168d4 19:84737a8fddb0
6 barcode=$1 6 barcode=$1
7 enzyme=$2 7 enzyme=$2
8 barcode_list=$3 8 barcode_list=$3
9 barcode_summary=$4 9 barcode_summary=$4
10 10
11 java -jar $GBSX_ROOT_PATH/GBSX.jar --BarcodeGenerator -b $barcode -e $enzyme 11 java -jar $GBSX_PATH/GBSX.jar --BarcodeGenerator -b $barcode -e $enzyme
12 12
13 awk '{print "sample" NR "\t" $1 "\t" var;}' var="$enzyme" barcode_list.txt > $barcode_list 13 awk '{print "sample" NR "\t" $1 "\t" var;}' var="$enzyme" barcode_list.txt > $barcode_list
14 cat barcode_summary.txt > $barcode_summary 14 cat barcode_summary.txt > $barcode_summary