Mercurial > repos > koen > gbsx
comparison gbsx_barcodeGenerator.sh @ 0:e9be4649dd28 draft
Uploaded gbsx_barcodeGenerator.sh
| author | koen |
|---|---|
| date | Wed, 13 Jan 2016 10:44:13 -0500 |
| parents | |
| children | 59c5f45c9ebf |
comparison
equal
deleted
inserted
replaced
| -1:000000000000 | 0:e9be4649dd28 |
|---|---|
| 1 #!/usr/bin/env bash | |
| 2 | |
| 3 #export PATH=$PATH:$(dirname $0) | |
| 4 #BASEDIR=$(dirname $0) | |
| 5 | |
| 6 barcode=$1 | |
| 7 enzyme=$2 | |
| 8 barcode_list=$3 | |
| 9 barcode_summary=$4 | |
| 10 | |
| 11 java -jar $GBSX_PATH/GBSX.jar --BarcodeGenerator -b $barcode -e $enzyme | |
| 12 | |
| 13 awk '{print "sample" NR "\t" $1 "\t" var;}' var="$enzyme" barcode_list.txt > $barcode_list | |
| 14 cat barcode_summary.txt > $barcode_summary |