Mercurial > repos > koen > gbsx

diff gbsx_barcodeGenerator.sh @ 16:331f373e5c22 draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
Uploaded
author koen
date Wed, 13 Jan 2016 11:43:41 -0500
parents 59c5f45c9ebf
children 84737a8fddb0
line wrap: on
line diff
--- a/gbsx_barcodeGenerator.sh	Wed Jan 13 11:28:16 2016 -0500
+++ b/gbsx_barcodeGenerator.sh	Wed Jan 13 11:43:41 2016 -0500
@@ -8,7 +8,7 @@
 barcode_list=$3
 barcode_summary=$4
 
-java -jar $GBSX_ROOT_DIR/GBSX.jar --BarcodeGenerator -b $barcode -e $enzyme
+java -jar $GBSX_ROOT_PATH/GBSX.jar --BarcodeGenerator -b $barcode -e $enzyme
 
 awk '{print "sample" NR "\t" $1 "\t" var;}' var="$enzyme" barcode_list.txt > $barcode_list
 cat barcode_summary.txt > $barcode_summary