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view gbsx_barcodeGenerator.sh @ 17:ded83f50b0d0 draft

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author koen
date Wed, 13 Jan 2016 11:44:05 -0500
parents 331f373e5c22
children 84737a8fddb0
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#!/usr/bin/env bash

#export PATH=$PATH:$(dirname $0)
#BASEDIR=$(dirname $0)

barcode=$1
enzyme=$2
barcode_list=$3
barcode_summary=$4

java -jar $GBSX_ROOT_PATH/GBSX.jar --BarcodeGenerator -b $barcode -e $enzyme

awk '{print "sample" NR "\t" $1 "\t" var;}' var="$enzyme" barcode_list.txt > $barcode_list
cat barcode_summary.txt > $barcode_summary