Mercurial > repos > koen > gbsx
view test-data/chr21.l150.apeki.txt @ 23:3b325560887b draft default tip
new version of gbsx: v1.2 with barcodeGenerator, demultiplex and digest
author | koen |
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date | Tue, 26 Jan 2016 07:56:34 -0500 |
parents | 062399f3787f |
children |
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input parameters: enzyme name used: ApeKI enzyme cut sequence: G^CWGC for bedfile, genome name used: genome read length provided: 150 minimum fragment size: 100 maximum fragment size: 1000 reference sequence(s) analyzed: chr21.fa total cuts for enzyme (ApeKI): 62623 looked at 62624 fragments in total 35553 fragments <= 1000 nt and >= 100 nt fragments in range per reference sequence: chr21 had 35553 fragments distances between fragments in range: <=1kb 28216 fragment pairs 1kb-10kb 7209 fragment pairs 10kb-100kb 125 fragment pairs 100kb-1Mb 1 fragment pairs 1Mb-10Mb 1 fragment pairs >10Mb 0 fragment pairs fragments less than 100 nt: 16329 fragments 100-199 nt: 9755 fragments 200-299 nt: 6571 fragments 300-399 nt: 4853 fragments 400-499 nt: 3701 fragments 500-599 nt: 2936 fragments 600-699 nt: 2430 fragments 700-799 nt: 2004 fragments 800-899 nt: 1789 fragments 900-999 nt: 1496