Mercurial > repos > koen > gbsx
changeset 6:42e50f8fa52e draft
Uploaded
| author | koen |
|---|---|
| date | Wed, 13 Jan 2016 10:51:02 -0500 |
| parents | 9819913262ec |
| children | 8fc38a4f9db6 |
| files | gbsx_barcodeGenerator.sh |
| diffstat | 1 files changed, 14 insertions(+), 0 deletions(-) [+] |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/gbsx_barcodeGenerator.sh Wed Jan 13 10:51:02 2016 -0500 @@ -0,0 +1,14 @@ +#!/usr/bin/env bash + +#export PATH=$PATH:$(dirname $0) +#BASEDIR=$(dirname $0) + +barcode=$1 +enzyme=$2 +barcode_list=$3 +barcode_summary=$4 + +java -jar $GBSX_PATH/GBSX.jar --BarcodeGenerator -b $barcode -e $enzyme + +awk '{print "sample" NR "\t" $1 "\t" var;}' var="$enzyme" barcode_list.txt > $barcode_list +cat barcode_summary.txt > $barcode_summary