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changeset 0:e9be4649dd28 draft

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Uploaded gbsx_barcodeGenerator.sh
author koen
date Wed, 13 Jan 2016 10:44:13 -0500
parents
children 29fc2bb7bc18
files gbsx_barcodeGenerator.sh
diffstat 1 files changed, 14 insertions(+), 0 deletions(-) [+]
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line diff
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/gbsx_barcodeGenerator.sh	Wed Jan 13 10:44:13 2016 -0500
@@ -0,0 +1,14 @@
+#!/usr/bin/env bash
+
+#export PATH=$PATH:$(dirname $0)
+#BASEDIR=$(dirname $0)
+
+barcode=$1
+enzyme=$2
+barcode_list=$3
+barcode_summary=$4
+
+java -jar $GBSX_PATH/GBSX.jar --BarcodeGenerator -b $barcode -e $enzyme
+
+awk '{print "sample" NR "\t" $1 "\t" var;}' var="$enzyme" barcode_list.txt > $barcode_list
+cat barcode_summary.txt > $barcode_summary