#Created 07/01/2011
#Konrad Paszkiewicz, Exeter Sequencing Service, University of Exeter 

Oases optimiser

This Galaxy tool is intended to provide a crude but effective method of producing semi-optimised transcriptome assemblies. It operates by performing a number of user defined Velvet assemblies upon which Oases is then run. The results of all of these runs are then put through a final Oases step where they act as scaffolds for the main assembly.

Prerequisites:

1. Enclosed scripts
2. Working installation of Velvet and Oases

Limitations:

This is a crude optimisation step which DOES NOT try to evaluate the quality of each assembly or map to any reference cDNA. 
