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comparison minfi_getsnp.xml @ 73:4caf1f2a4a65 draft

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author kpbioteam
date Fri, 10 May 2019 06:44:02 -0400
parents 7e6f943984b0
children 9c6fbb7d5a2a
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72:5cda2c8d0316 73:4caf1f2a4a65
1 <tool id="minfi_getsnp" name="Minfi Get SNP" version="@MINFI_VERSION@"> 1 <tool id="minfi_getsnp" name="Minfi Get SNPs" version="@MINFI_VERSION@">
2 <description>retrieve the chromosome and the position of each SNP</description> 2 <description>retrieve the chromosome and the position of each SNP</description>
3 <macros> 3 <macros>
4 <import>macros.xml</import> 4 <import>macros.xml</import>
5 </macros> 5 </macros>
6 <expand macro="requirements"> 6 <expand macro="requirements">
22 write.table(snps, '$table') 22 write.table(snps, '$table')
23 ]]> 23 ]]>
24 </configfile> 24 </configfile>
25 </configfiles> 25 </configfiles>
26 <inputs> 26 <inputs>
27 <param type="data" name="grset" format="rdata" label="Genomic Ratio Set" help="This class holds preprocessed data for Illumina methylation microarrays, mapped to a genomic 27 <param type="data" name="grset" format="rdata" label="Data Mapped To The Genome" help="This class (GenomicRatioSet) holds preprocessed data for Illumina methylation microarrays, mapped to a genomic
28 location."/> 28 location."/>
29 </inputs> 29 </inputs>
30 <outputs> 30 <outputs>
31 <data name="table" format="txt" label="SNPInfo Table"/> 31 <data name="table" format="txt" label="SNPInfo Table"/>
32 </outputs> 32 </outputs>