Mercurial > repos > kpbioteam > ewastools

comparison minfi_dmr.xml @ 75:9c6fbb7d5a2a draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload for repository https://github.com/kpbioteam/ewas_galaxy commit 9ce5c86f66f4a0cb64a1b8f48a2a937268b62064-dirty
author kpbioteam
date Mon, 20 May 2019 07:14:26 -0400
parents 1334312dc198
children
comparison
equal deleted inserted replaced
74:53aaf097238c 75:9c6fbb7d5a2a
54 write.table(dmrGR, file= '$dmr', quote = FALSE,col.names = TRUE, row.names = FALSE, sep = "\t") 54 write.table(dmrGR, file= '$dmr', quote = FALSE,col.names = TRUE, row.names = FALSE, sep = "\t")
55 ]]> 55 ]]>
56 </configfile> 56 </configfile>
57 </configfiles> 57 </configfiles>
58 <inputs> 58 <inputs>
59 <param type="data" name="grset" format="rdata" label="Data Mapped To The Genome" help="This class (GenomicRatioSet) holds preprocessed data for Illumina methylation microarrays, mapped to a genomic 59 <param type="data" name="grset" format="rdata" label="Data Mapped To The Genome"
60 location." /> 60 help="This class (GenomicRatioSet) holds preprocessed data for Illumina methylation microarrays, mapped to a genomic location." />
61 <param type="data" name="phenotype_table" format="tabular" label="Phenotype Table" 61 <param type="data" name="phenotype_table" format="tabular" label="Phenotype Table"
62 help="Phenotype Table must include the following information: sampleID, phenotype and paird or unpaired samples column"/> 62 help="Phenotype Table must include the following information: sampleID, phenotype and paird or unpaired samples column"/>
63 <param name="maxgap_size" type="integer" value="250" label="maxGap Size" 63 <param name="maxgap_size" type="integer" value="250" label="maxGap Size"
64 help="If cluster is not provided this maximum location gap will be used to define cluster"/> 64 help="If cluster is not provided this maximum location gap will be used to define cluster"/>
65 <param name="cutoff_size" type="float" value="0.1" label="Cutoff Size" 65 <param name="cutoff_size" type="float" value="0.1" label="Cutoff Size"