Mercurial > repos > kpbioteam > ewastools

comparison minfi_maptogenome.xml @ 75:9c6fbb7d5a2a draft

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planemo upload for repository https://github.com/kpbioteam/ewas_galaxy commit 9ce5c86f66f4a0cb64a1b8f48a2a937268b62064-dirty
author kpbioteam
date Mon, 20 May 2019 07:14:26 -0400
parents ea20cc034d53
children
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74:53aaf097238c 75:9c6fbb7d5a2a
10 <![CDATA[ 10 <![CDATA[
11 Rscript '$minfi_mtg_script' 11 Rscript '$minfi_mtg_script'
12 ]]> 12 ]]>
13 </command> 13 </command>
14 <configfiles> 14 <configfiles>
15 <configfile name="minfi_mtg_script"><![CDATA[ 15 <configfile name="minfi_mtg_script"><![CDATA[
16 require("minfi", quietly = TRUE) 16 require("minfi", quietly = TRUE)
17 require("IlluminaHumanMethylation450kanno.ilmn12.hg19", quietly = TRUE) 17 require("IlluminaHumanMethylation450kanno.ilmn12.hg19", quietly = TRUE)
18 18
19 RSet <- get(load('$rset')) 19 RSet <- get(load('$rset'))
20 20
21 GRSet <- mapToGenome(RSet) 21 GRSet <- mapToGenome(RSet)
22 22
23 save(GRSet,file = '$grset') 23 save(GRSet,file = '$grset')
24 ]]> 24 ]]>
25 </configfile> 25 </configfile>
26 </configfiles> 26 </configfiles>
27 <inputs> 27 <inputs>
28 <param type="data" name="rset" format="rdata" label="Methylation Data to Map" help="This class holds preprocessed data for Illumina methylation microarrays." /> 28 <param type="data" name="rset" format="rdata" label="Methylation Data to Map" help="This class holds preprocessed data for Illumina methylation microarrays." />
29 </inputs> 29 </inputs>
30 <outputs> 30 <outputs>