0
|
1 application: gpalindrome [
|
|
2 documentation: "Searches palindrome sequences"
|
|
3 groups: "Nucleic:Composition"
|
|
4 embassy: "gembassy"
|
|
5 relations: "EDAM_topic:0157 Sequence composition analysis"
|
|
6 relations: "EDAM_operation:0377 Sequence composition calculation
|
|
7 (nucleic acid)"
|
|
8 ]
|
|
9
|
|
10 section: input [
|
|
11 information: "Input section"
|
|
12 type: "page"
|
|
13 ]
|
|
14
|
|
15 seqall: sequence [
|
|
16 parameter: "Y"
|
|
17 type: "nucleotide"
|
|
18 features: "Y"
|
|
19 relations: "EDAM_data:0849 Sequence record"
|
|
20 ]
|
|
21
|
|
22 endsection: input
|
|
23
|
|
24 section: advanced [
|
|
25 information: "Advanced section"
|
|
26 type: "page"
|
|
27 ]
|
|
28
|
|
29 integer: shortest [
|
|
30 information: "Shortest palindrome to search"
|
|
31 default: "4"
|
|
32 ]
|
|
33
|
|
34 integer: loop [
|
|
35 information: "Longest stem loop to allow"
|
|
36 default: "0"
|
|
37 ]
|
|
38
|
|
39 boolean: gtmatch [
|
|
40 information: "If 1, allows g-t match"
|
|
41 default: "0"
|
|
42 ]
|
|
43
|
|
44 boolean: accid [
|
|
45 information: "Include to use sequence accession ID as query"
|
|
46 default: "N"
|
|
47 ]
|
|
48
|
|
49 endsection: advanced
|
|
50
|
|
51 section: output [
|
|
52 information: "Output section"
|
|
53 type: "page"
|
|
54 ]
|
|
55
|
|
56 outfile: outfile [
|
|
57 parameter: "Y"
|
|
58 information: "Program compseq output file"
|
|
59 knowntype: "compseq output"
|
|
60 relations: "EDAM_data:3086 Nucleic acid sequence composition"
|
|
61 ]
|
|
62
|
|
63 endsection: output
|