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1 application: gldabias [
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2 documentation: "Calculates strand bias of bacterial genome using linear
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3 discriminant analysis (LDA)"
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4 groups: "Nucleic:Composition"
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5 embassy: "gembassy"
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6 relations: "EDAM_topic:0157 Sequence composition analysis"
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7 relations: "EDAM_operation:0377 Sequence composition calculation
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8 (nucleic acid)"
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9 ]
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10
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11 section: input [
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12 information: "Input section"
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13 type: "page"
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14 ]
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15
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16 seqall: sequence [
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17 parameter: "Y"
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18 type: "nucleotide"
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19 features: "Y"
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20 relations: "EDAM_data:0849 Sequence record"
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21 ]
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22
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23 endsection: input
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24
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25 section: advanced [
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26 information: "Advanced section"
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27 type: "page"
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28 ]
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29
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30 integer: coefficients [
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31 information: "Show LDA coefficients"
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32 default: "0"
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33 ]
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34
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35 selection: variable [
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36 information: "Data to use for LDA. Either 'base', 'codonbase', 'codon', or
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37 'amino'"
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38 values: "base;codonbase;codon;amino"
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39 default: "codon"
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40 ]
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41
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42 boolean: accid [
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43 information: "Include to use sequence accession ID as query"
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44 default: "N"
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45 ]
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46
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47 endsection: advanced
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48
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49 section: output [
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50 information: "Output section"
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51 type: "page"
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52 ]
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53
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54 outfile: outfile [
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55 parameter: "Y"
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56 information: "Program compseq output file"
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57 knowntype: "compseq output"
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58 relations: "EDAM_data:3086 Nucleic acid sequence composition"
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59 ]
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60
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61 endsection: output
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