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1 <tool id="EMBOSS: kcentroidfold" name="kcentroidfold" version="1.0.2">
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2 <description>Predicts RNA 2D structure using CentroidFold</description>
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3 <command>kcentroidfold -seqall $input1 -engine $engine -gamma $gamma -auto -outfile $out_file1</command>
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4 <inputs>
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5 <param format="data" name="input1" type="data">
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6 <label>Sequence</label>
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7 </param>
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8 <param name="engine" size="4" type="text" value="CONTRAfold">
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9 <label>specify the inference engine. 'CONTRAfold', 'McCaskill', 'pfold' or 'AUX'</label>
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10 </param>
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11 <param name="gamma" size="4" type="integer" value="4">
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12 <label>weight of base pairs (2^-5 ~ 2^10)</label>
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13 </param>
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14
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15 </inputs>
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16 <outputs>
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17 <data format="txt" name="out_file1" label="${tool.name} for ${input1.name}" />
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18 </outputs>
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19 </tool>
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