2
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1 <tool id="EMBOSS: kglimmer" name="kglimmer" version="1.0.2">
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2 <description>Finds genes in prokaryotic genomes using Glimmer</description>
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3 <command>kglimmer -seqall $input1 -topology $topology -gencode $gencode -auto -outfile $out_file1</command>
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4 <inputs>
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5 <param format="data" name="input1" type="data">
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6 <label>Sequence</label>
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7 </param>
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8 <param name="topology" size="4" type="text" value="circular">
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9 <label>Genome topology ('circular' or 'linear')</label>
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10 </param>
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11 <param name="gencode" size="4" type="integer" value="11">
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12 <label>Genetic code. '11': Bacteria or Archaea, '4': Mycoplasma/Spiroplasma</label>
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13 </param>
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14
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15 </inputs>
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16 <outputs>
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17 <data format="txt" name="out_file1" label="${tool.name} for ${input1.name}" />
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18 </outputs>
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19 </tool>
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