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comparison GEMBASSY-1.0.3/acd/genret.acd @ 0:8300eb051bea draft

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author ktnyt
date Fri, 26 Jun 2015 05:19:29 -0400
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1 application: genret [
2 documentation: "Retrieves various gene features from genome flatfile"
3 groups: "Edit, Data retrieval, Feature tables"
4 embassy: "gembassy"
5 relations: "EDAM_topic:0160 Sequence sites and features"
6 relations: "EDAM_topic:0091 Data handling"
7 relations: "EDAM_operation:2422 Data retrieval"
8 ]
9
10 section: input [
11 information: "Input section"
12 type: "page"
13 ]
14
15 seqall: sequence [
16 parameter: "Y"
17 type: "nucleotide"
18 features: "Y"
19 relations: "EDAM_data:0849 Sequence record"
20 ]
21
22 string: gene [
23 parameter: "Y"
24 information: "List of gene name(s) to report"
25 knowntype: "sequence id list"
26 default: "*"
27 ]
28
29 string: access [
30 parameter: "Y"
31 information: "Name of gene feature to access"
32 knowntype: "feature key"
33 word: "Y"
34 ]
35
36 endsection: input
37
38 section: advanced [
39 information: "Advanced section"
40 type: "page"
41 ]
42
43 string: argument [
44 information: "Extra arguments to pass to method"
45 knowntype: "string"
46 default: ""
47 ]
48
49 boolean: accid [
50 information: "Include to use sequence accession ID as query"
51 default: "N"
52 ]
53
54 endsection: advanced
55
56 section: output [
57 information: "Output section"
58 type: "page"
59 ]
60
61 outfile: outfile [
62 parameter: "Y"
63 extension: "$(access).genret"
64 information: "Sequence output file"
65 knowntype: "sequence data"
66 ]
67
68 endsection: output