Mercurial > repos > ktnyt > gembassy
comparison GEMBASSY-1.0.3/acd/gfop.acd @ 0:8300eb051bea draft
Initial upload
| author | ktnyt |
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| date | Fri, 26 Jun 2015 05:19:29 -0400 |
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| -1:000000000000 | 0:8300eb051bea |
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| 1 application: gfop [ | |
| 2 documentation: "Calculates the frequency of optimal codons (Fop)" | |
| 3 groups: "Nucleic:Codon Usage" | |
| 4 embassy: "gembassy" | |
| 5 relations: "EDAM_operation:0286 Codon usage analysis" | |
| 6 relations: "EDAM_topic:0107 Codon usage analysis" | |
| 7 ] | |
| 8 | |
| 9 section: input [ | |
| 10 information: "Input section" | |
| 11 type: "page" | |
| 12 ] | |
| 13 | |
| 14 seqall: sequence [ | |
| 15 parameter: "Y" | |
| 16 type: "nucleotide" | |
| 17 features: "Y" | |
| 18 relations: "EDAM_data:0849 Sequence record" | |
| 19 ] | |
| 20 | |
| 21 endsection: input | |
| 22 | |
| 23 section: advanced [ | |
| 24 information: "Advanced section" | |
| 25 type: "page" | |
| 26 ] | |
| 27 | |
| 28 boolean: translate [ | |
| 29 information: "Include when translates using standard codon table" | |
| 30 default: "N" | |
| 31 ] | |
| 32 | |
| 33 boolean: accid [ | |
| 34 information: "Include to use sequence accession ID as query" | |
| 35 default: "N" | |
| 36 ] | |
| 37 | |
| 38 endsection: advanced | |
| 39 | |
| 40 section: output [ | |
| 41 information: "Output section" | |
| 42 type: "page" | |
| 43 ] | |
| 44 | |
| 45 outfile: outfile [ | |
| 46 parameter: "Y" | |
| 47 information: "Codon usage output file" | |
| 48 knowntype: "codon usage" | |
| 49 relations: "EDAM_data:2865 Codon usage bias" | |
| 50 ] | |
| 51 | |
| 52 endsection: output |