Mercurial > repos > ktnyt > gembassy
comparison GEMBASSY-1.0.3/acd/gseq2png.acd @ 0:8300eb051bea draft
Initial upload
| author | ktnyt |
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| date | Fri, 26 Jun 2015 05:19:29 -0400 |
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| -1:000000000000 | 0:8300eb051bea |
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| 1 application: gseq2png [ | |
| 2 documentation: "Converts a sequence to PNG image" | |
| 3 groups: "Display" | |
| 4 embassy: "gembassy" | |
| 5 relations: "EDAM_topic:0092 Data visualisation" | |
| 6 relations: "EDAM_topic:0157 Sequence composition analysis" | |
| 7 relations: "EDAM_operation:0377 Sequence composition calculation | |
| 8 (nucleic acid)" | |
| 9 ] | |
| 10 | |
| 11 section: input [ | |
| 12 information: "Input section" | |
| 13 type: "page" | |
| 14 ] | |
| 15 | |
| 16 seqall: sequence [ | |
| 17 parameter: "Y" | |
| 18 type: "nucleotide" | |
| 19 features: "Y" | |
| 20 relations: "EDAM_data:0849 Sequence record" | |
| 21 ] | |
| 22 | |
| 23 string: format [ | |
| 24 information: "Output file format. Dependent on 'convert' command" | |
| 25 knowntype: "output format" | |
| 26 default: "png" | |
| 27 ] | |
| 28 | |
| 29 endsection: input | |
| 30 | |
| 31 section: advanced [ | |
| 32 information: "Advanced section" | |
| 33 type: "page" | |
| 34 ] | |
| 35 | |
| 36 integer: width [ | |
| 37 information: "Width of the image" | |
| 38 default: "640" | |
| 39 ] | |
| 40 | |
| 41 integer: window [ | |
| 42 information: "Window size of a sequence to represent each pixel" | |
| 43 default: "20" | |
| 44 ] | |
| 45 | |
| 46 endsection: advanced | |
| 47 | |
| 48 section: output [ | |
| 49 information: "Output section" | |
| 50 type: "page" | |
| 51 ] | |
| 52 | |
| 53 string: goutfile [ | |
| 54 information: "Output file for non interactive displays" | |
| 55 knowntype: "output filename" | |
| 56 relations: "EDAM_data:2166 Sequence composition plot" | |
| 57 default: "gseq2png" | |
| 58 ] | |
| 59 | |
| 60 endsection: output |