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comparison GEMBASSY-1.0.3/acd/gshuffleseq.acd @ 0:8300eb051bea draft

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author ktnyt
date Fri, 26 Jun 2015 05:19:29 -0400
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1 application: gshuffleseq [
2 documentation: "Creates randomized sequence with conserved k-mer composition"
3 groups: "Nucleic:Mutation"
4 embassy: "gembassy"
5 groups: "Nucleic:Mutation, Protein:Mutation"
6 relations: "EDAM_topic:0091 Data handling"
7 relations: "EDAM_topic:0199 Genetic variation"
8 relations: "EDAM_operation:0367 Sequence mutation and randomization"
9 ]
10
11 section: input [
12 information: "Input section"
13 type: "page"
14 ]
15
16 seqall: sequence [
17 parameter: "Y"
18 type: "any"
19 relations: "EDAM_data:0849 Sequence record"
20 ]
21
22 endsection: input
23
24 section: advanced [
25 information: "Advanced section"
26 type: "page"
27 ]
28
29 integer: k [
30 information: "Sequence k-mer to preserve composition"
31 default: "1"
32 ]
33
34 endsection: advanced
35
36 section: output [
37 information: "Output section"
38 type: "page"
39 ]
40
41 seqout: outseq [
42 parameter: "Y"
43 relations: "EDAM_data:0849 Sequence record"
44 ]
45
46 endsection: output