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comparison GEMBASSY-1.0.3/src/Makefile.am @ 0:8300eb051bea draft

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author ktnyt
date Fri, 26 Jun 2015 05:19:29 -0400
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1 ## Process this file with automake to produce Makefile.in
2
3 if LOCALLINK
4 INCLUDES = -I../include -I../../../nucleus -I../../../ajax/pcre \
5 -I../../../ajax/expat -I../../../ajax/zlib \
6 -I../../../ajax/core -I../../../ajax/graphics \
7 -I../../../ajax/ensembl -I../../../ajax/ajaxdb \
8 -I../../../ajax/acd -I../../../plplot -I../gsoap
9 else
10 INCLUDES = -I../include -I${embprefix}/include -I${embprefix}/include/eplplot -I${embprefix}/include/epcre -I${embprefix}/include/ezlib -I../gsoap
11 endif
12
13 if ISSHARED
14 if ISAIXIA64
15 if LOCALLINK
16 AIX_CFLAGS = -Wl,-bdynamic -Wl,-brtl -L../../../plplot/.libs \
17 -L../../../ajax/pcre/.libs -L../../../ajax/expat/.libs \
18 -L../../../ajax/zlib/.libs -L../../../ajax/core/.libs \
19 -L../../../ajax/graphics/.libs -L../../../ajax/ensembl/.libs \
20 -L../../../ajax/ajaxdb/.libs -L../../../ajax/acd/.libs \
21 -L../../../nucleus/.libs \
22 -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -leexpat -lepcre \
23 -lezlib -leplplot
24 else
25 AIX_CFLAGS = -Wl,-bdynamic -Wl,-brtl -L${embprefix}/lib -lnucleus -lacd \
26 -lajaxdb -lensembl -lajaxg -lajax -leexpat -lepcre -lezlib -leplplot
27 endif
28 endif
29 endif
30
31 AM_CFLAGS = $(AIX_CFLAGS) $(WARN_CFLAGS) $(DEVWARN_CFLAGS)
32
33 ## To add programs
34 ## Add the program binary name to bin_PROGRAMS
35 ## (using \ as a continuation character for multiple lines)
36 ##
37 ## And add a programname_SOURCES line to define the source files
38 ## to be compiled and linked
39 ##
40 ## make will compile and link the program
41 ## make install will copy the program to the install directory
42
43 bin_PROGRAMS = genret \
44 gaaui\
45 gaminoinfo\
46 gb1\
47 gb2\
48 gbasecounter\
49 gbaseentropy\
50 gbaseinformationcontent\
51 gbaserelativeentropy\
52 gbasezvalue\
53 gbui\
54 gcai\
55 gcbi\
56 gcgr\
57 gcircularmap\
58 gcodoncompiler\
59 gconsensusz\
60 gdeltaenc\
61 gdeltagcskew\
62 gdinuc\
63 gdistincc\
64 gdnawalk\
65 genc\
66 gentrez\
67 gew\
68 gfindoriter\
69 gfop\
70 ggcsi\
71 ggcskew\
72 ggcwin\
73 ggeneskew\
74 ggenomicskew\
75 ggenomemap3\
76 gicdi\
77 gkmertable\
78 gldabias\
79 gnucleotideperiodicity\
80 goligomercounter\
81 goligomersearch\
82 gp2\
83 gpalindrome\
84 gphx\
85 gqueryarm\
86 gquerystrand\
87 greporiter\
88 gsvalue\
89 gscs\
90 gseq2png\
91 gseqinfo\
92 gshuffleseq\
93 gsignature\
94 gviewcds\
95 gwvalue
96
97 genret_SOURCES = genret.c
98 gaaui_SOURCES = gaaui.c
99 gaminoinfo_SOURCES = gaminoinfo.c
100 gb1_SOURCES = gb1.c
101 gb2_SOURCES = gb2.c
102 gbasecounter_SOURCES = gbasecounter.c
103 gbaseentropy_SOURCES = gbaseentropy.c
104 gbaseinformationcontent_SOURCES = gbaseinformationcontent.c
105 gbaserelativeentropy_SOURCES = gbaserelativeentropy.c
106 gbasezvalue_SOURCES = gbasezvalue.c
107 gbui_SOURCES = gbui.c
108 gcai_SOURCES = gcai.c
109 gcbi_SOURCES = gcbi.c
110 gcgr_SOURCES = gcgr.c
111 gcircularmap_SOURCES = gcircularmap.c
112 gcodoncompiler_SOURCES = gcodoncompiler.c
113 gconsensusz_SOURCES = gconsensusz.c
114 gdeltaenc_SOURCES = gdeltaenc.c
115 gdeltagcskew_SOURCES = gdeltagcskew.c
116 gdistincc_SOURCES = gdistincc.c
117 gdinuc_SOURCES = gdinuc.c
118 gdnawalk_SOURCES = gdnawalk.c
119 genc_SOURCES = genc.c
120 gentrez_SOURCES = gentrez.c
121 gew_SOURCES = gew.c
122 gfindoriter_SOURCES = gfindoriter.c
123 gfop_SOURCES = gfop.c
124 ggcsi_SOURCES = ggcsi.c
125 ggcwin_SOURCES = ggcwin.c
126 ggeneskew_SOURCES = ggeneskew.c
127 ggenomicskew_SOURCES = ggenomicskew.c
128 ggenomemap3_SOURCES = ggenomemap3.c
129 gicdi_SOURCES = gicdi.c
130 gkmertable_SOURCES = gkmertable.c
131 gldabias_SOURCES = gldabias.c
132 gnucleotideperiodicity_SOURCES = gnucleotideperiodicity.c
133 goligomercounter_SOURCES = goligomercounter.c
134 goligomersearch_SOURCES = goligomersearch.c
135 gp2_SOURCES = gp2.c
136 gpalindrome_SOURCES = gpalindrome.c
137 gphx_SOURCES = gphx.c
138 gqueryarm_SOURCES = gqueryarm.c
139 gquerystrand_SOURCES = gquerystrand.c
140 greporiter_SOURCES = greporiter.c
141 gsvalue_SOURCES = gsvalue.c
142 gscs_SOURCES = gscs.c
143 gseq2png_SOURCES = gseq2png.c
144 gseqinfo_SOURCES = gseqinfo.c
145 gshuffleseq_SOURCES = gshuffleseq.c
146 gsignature_SOURCES = gsignature.c
147 gviewcds_SOURCES = gviewcds.c
148 gwvalue_SOURCES = gwvalue.c
149
150 if LOCALLINK
151 LDADD = ../../../nucleus/libnucleus.la ../../../ajax/acd/libacd.la \
152 ../../../ajax/ajaxdb/libajaxdb.la \
153 ../../../ajax/ensembl/libensembl.la \
154 ../../../ajax/graphics/libajaxg.la \
155 ../../../ajax/core/libajax.la \
156 ../../../ajax/zlib/libezlib.la \
157 ../../../ajax/expat/libeexpat.la \
158 ../../../ajax/pcre/libepcre.la \
159 ../../../plplot/libeplplot.la \
160 $(XLIB)
161 else
162 LDADD = -L${embprefix}/lib -L../include -lnucleus -lacd -lajaxdb -lensembl \
163 -lajaxg -lajax -leexpat -lepcre -lezlib -leplplot $(XLIB)
164 endif