Mercurial > repos > ktnyt > gembassy
comparison glang-galaxy-conf/kbws/kcentroidfold.xml @ 2:8947fca5f715 draft default tip
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author | ktnyt |
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date | Fri, 26 Jun 2015 05:21:44 -0400 |
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1:84a17b3fad1f | 2:8947fca5f715 |
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1 <tool id="EMBOSS: kcentroidfold" name="kcentroidfold" version="1.0.2"> | |
2 <description>Predicts RNA 2D structure using CentroidFold</description> | |
3 <command>kcentroidfold -seqall $input1 -engine $engine -gamma $gamma -auto -outfile $out_file1</command> | |
4 <inputs> | |
5 <param format="data" name="input1" type="data"> | |
6 <label>Sequence</label> | |
7 </param> | |
8 <param name="engine" size="4" type="text" value="CONTRAfold"> | |
9 <label>specify the inference engine. 'CONTRAfold', 'McCaskill', 'pfold' or 'AUX'</label> | |
10 </param> | |
11 <param name="gamma" size="4" type="integer" value="4"> | |
12 <label>weight of base pairs (2^-5 ~ 2^10)</label> | |
13 </param> | |
14 | |
15 </inputs> | |
16 <outputs> | |
17 <data format="txt" name="out_file1" label="${tool.name} for ${input1.name}" /> | |
18 </outputs> | |
19 </tool> |